Pdom054602.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- -
- Assembly
- GCA_947397865.1
- Location
- OX377621.1:171985240-171988537[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.24 44 6.5 1.1 2 23 385 407 384 407 0.95 2 16 3.1 5.6e+02 3.1 0.1 6 23 417 434 417 434 0.97 3 16 0.012 2.3 10.6 4.0 1 23 440 463 440 463 0.97 4 16 0.0025 0.46 12.8 3.3 1 16 471 486 471 494 0.90 5 16 0.0045 0.83 12.0 0.3 1 23 541 563 541 563 0.98 6 16 0.00044 0.082 15.1 1.8 1 23 570 593 570 593 0.97 7 16 3.8 7e+02 2.7 1.2 2 23 630 651 629 652 0.92 8 16 0.038 7.1 9.0 8.9 1 23 685 708 685 708 0.98 9 16 9.2e-05 0.017 17.3 0.1 2 23 711 733 710 733 0.92 10 16 0.11 20 7.6 3.5 1 23 747 769 747 769 0.96 11 16 0.00027 0.05 15.8 0.6 1 23 775 797 775 797 0.98 12 16 0.011 2.1 10.7 0.5 2 23 804 825 803 825 0.96 13 16 6.8e-06 0.0012 20.8 0.9 1 23 831 854 831 854 0.95 14 16 0.82 1.5e+02 4.9 3.5 1 19 896 914 896 919 0.89 15 16 0.0015 0.28 13.4 3.6 1 23 1002 1025 1002 1025 0.93 16 16 0.004 0.74 12.1 0.6 1 23 1044 1067 1044 1067 0.90
Sequence Information
- Coding Sequence
- ATGTCGCCAACAAAGCTCTGCCGGTTGTGTCTGATTGATTGCCATGAGGGCAAGAGTCTTTACGATGAAGATGGTCGGCAAACTGAGTTGTACAAAATCATCTTCACATATTTCCATCCCGAGATTTTGAACATGTACGAAGCGAAACACCTCAGCGACATCTGCTGGCAATGTTGGCGTCACATTTGTGACTTTCACAGCTTCCAAACACAGATACAGGTTGCTCAATTAAAACTCATGGTGGAAGACAAGGTTGTTGTTGACGAGACCACAAAAGAGTTAGAGTCCATGGCGGGGGAATGTCTCCGCAGGAGTGGCGCTTCATTCGAAGAAATAGCTGACGACCACCTCTTGTCTATTAAGGACGAAGAAGAAGAGTTTATATCTGAGCCAGTGCCAGAGGAAGACAGGATTGCTGCAGGCAGCGATAGTCGAGGCAATGGAGGTGATCCATGCTCTAAGGATAGAACTTCAGAACCACTTGATTTATGGCCACAAGAGTCCGAAGAACCATCAGTTTTGGTCATCGCCGATGATGCCACGACTGCTGCTGATAACGAGGTTAATAGTCCAGGCAAATTGTTCGAGAAGCTCGAGGGTAAATCTCTTGATTTAGACTCGATTGCAGCAGGCAACGACAGTCAAGACAATGGAGGTGATTCATGCTCTAAGGATAGAACTTTATGGACGAGAGAGTACACTGAACCAACAGTTTTGGTCATCGCTGATGATGCCACGACAGCTGCTGATAAGGAGGGCATTAGTTCAGGCAAATTGTTCGAGAAGCTCGAGGCTAAATCTCTTGATTTCAACTCGATTGCTGCAGGCAGCGACAGTCAAGGCAATGGAGGTGATCCATGCTCTAAGAATAGAACTTTATGGGCTCAAGGGTCCTATGAACCAACTGCTGCTGATAACGAGGTTAATAGTCCCGACCATTTGTCCGAGAAGTACGAGCCGAAATCTGTTGGTTATGTGCCCCCAGCTGAACAAGATCCTAGTGACTTCAGTTCGGAAGATGATATGCCATTGTCAAGATTTGTGGACAGATCCAAAGTAACTCTCCTTGAAAGCAATGTGTCGAAAATATCAGCTAACAAAATTGAAACCCAAAGCCTCGATGACCTTGTAGCCGCTTGGATTCCCAATATAAAGTGCGTAGTGTGTTCCGAGACCTCTGCCAAATACTCCCAGTATCGTCAACATTTTCGCCAGCAACACCCACACCAGAAATTTTATATAACCTGCTGCAACGCCAAGTTCTCAATACCCAGTAAAATTGAGCAGCATATACGATTCCACAACGATCCGAAGGTCTTTAAGTGTCGCTGGTGTGGCGGATGCTTTAGAGATAAGTTCGGCTTGGGTCATCACATCAGCAGGCGTCACCCCGAAACGGTGGACAGGAAGTATGTATGTCCGAAATGTGGCAAAAGCTTTACCACAAACAAGGGTCTCAGCTTTCATTGTTCCAAAAGTCATACGACTTTGAGACGTCCCAAACGTTTGACACTGGCCGACGGTAGCACGGTGTTCAAGTGCCGGGAATGTGAATACGCTAGTCACTCCTTCCATTCCTTCACTCATCACAGATGGTATGAGCACAATCGTAATCCCAGTTTCAAATGCGCCATTTGTGGCAGTCGCTTTCTACTTGCCTCCCTCTTGCGTAAACATATGACTGTGCACACCACGCGACCGGCAATTTTCGAATGTAAAGTTTGTGGTATGGTCTTTCAATCTTACAAATATTTTGTGCGACACAAGAGGGTCAAACACAACGAGAGGGAAGATGCAGCCAAACCAATAACCTCGAACAGGAAAAATCAATTACAAGCTGAGAAGCAGGAACTAGATATGCTTGTAGCCACATGGCTACCTCACATCGAATGTGCAGTATGCTCACAGCCGTATCCTTGTTTGTCATTGTTGCAGGATCACTTTCGCCAACATCATGCCCAGGAGAGATTTTACATTTCATGCTGCGGCCGCAAGCTGAGCTCTCTAGTCCTCATCAAAGATCACTTCCAGCATCACAGTGATCCCGATGCTTTTAAATGTCAATTGTGTGGAAAGTGTCACAACTTTAGCCACAATTTGAAATTACACATGAAACGGGAACATACCCAAACTTGCCCAGAATGCCCTCAAAGCTTTAGATCTAAAGCTGCCCTACGATTGCATTACATTGCCGTGCATGAAGGCATTATCCAGGCATCCACAAGCCACCAAACGTATTATGCCTGCAACGAATGTGGCAGAATTTGCAAAACGCTGCCAGCTCTACGCTGCCACAAGAGATACCATCGCATCACACATAGGTACAAATGTTCGATTTGCGCCAAAGCTTTTATGTTTTCCGGTTCGTTGCGTGTACATTTAACCAAGCACAGGCTTATAGATAAGCTCAAGTGTGGCTTTTGTGGCAAACGACTTAAGAGTCCGCAGACATTCGACAAACATGTTGCTTCCCACAAGAGGGATGGCATCTACGCTTGTCCAGATTGTCCCAAGAGCTTTACTCATTTGGCGTACTTCAATCAACATCAGCAGCTCGTACACTCGCCAACAAGTGAAGGCGAAGAAACTAACGAAGTTAACAACATATCCCAGGAGCCGGAAATTGAGGTCGATAATACAACCCCAGCCGAGAAAAGCTGTGCTACTCATGAGAAGGACAATGCTTACTCATGCTCATTTTGCCTCATGAGCTTTAGCCAACGCAACAATTTCGATGAACATTGCAAATTGGCACATCCCGCGAAAATTGACGAAACTGTATCAAATAAAGTTGCCGACCTATCCCAGATCCCTAGCAAACACATTGCCACTCCACATGGGAGCTATAGCCAACGCAACAATTTCGATGAACATTGCAAAGTGACACATCCTGCGGAAATTGAAGATCGGCAAACCTACAAATCTGTACCAGATAAAGTTACTGACCTATCCCAGATCCCGAGCCAACACACTGCTGCCACTCTACATGGGGCGGACGGCATTCACAAATGTCCAGTTTGTGCCAAGACTTTCATTACTCGCAGCTATTTGGATCGGCATTGCCAAACGGCACATCCGTCATTCAAGAAACGGAGCAAACGCGTTGACACGAGCAAGACAAAAAACATCTACGAATGCCCATCTTGTCCCATGGGTTTCATTAATCGCAGCAATTTCGAACTACATTGCAAAATTGCACATCCTCAAGCAGGCGATACTAATACTAATCCAGAATAA
- Protein Sequence
- MSPTKLCRLCLIDCHEGKSLYDEDGRQTELYKIIFTYFHPEILNMYEAKHLSDICWQCWRHICDFHSFQTQIQVAQLKLMVEDKVVVDETTKELESMAGECLRRSGASFEEIADDHLLSIKDEEEEFISEPVPEEDRIAAGSDSRGNGGDPCSKDRTSEPLDLWPQESEEPSVLVIADDATTAADNEVNSPGKLFEKLEGKSLDLDSIAAGNDSQDNGGDSCSKDRTLWTREYTEPTVLVIADDATTAADKEGISSGKLFEKLEAKSLDFNSIAAGSDSQGNGGDPCSKNRTLWAQGSYEPTAADNEVNSPDHLSEKYEPKSVGYVPPAEQDPSDFSSEDDMPLSRFVDRSKVTLLESNVSKISANKIETQSLDDLVAAWIPNIKCVVCSETSAKYSQYRQHFRQQHPHQKFYITCCNAKFSIPSKIEQHIRFHNDPKVFKCRWCGGCFRDKFGLGHHISRRHPETVDRKYVCPKCGKSFTTNKGLSFHCSKSHTTLRRPKRLTLADGSTVFKCRECEYASHSFHSFTHHRWYEHNRNPSFKCAICGSRFLLASLLRKHMTVHTTRPAIFECKVCGMVFQSYKYFVRHKRVKHNEREDAAKPITSNRKNQLQAEKQELDMLVATWLPHIECAVCSQPYPCLSLLQDHFRQHHAQERFYISCCGRKLSSLVLIKDHFQHHSDPDAFKCQLCGKCHNFSHNLKLHMKREHTQTCPECPQSFRSKAALRLHYIAVHEGIIQASTSHQTYYACNECGRICKTLPALRCHKRYHRITHRYKCSICAKAFMFSGSLRVHLTKHRLIDKLKCGFCGKRLKSPQTFDKHVASHKRDGIYACPDCPKSFTHLAYFNQHQQLVHSPTSEGEETNEVNNISQEPEIEVDNTTPAEKSCATHEKDNAYSCSFCLMSFSQRNNFDEHCKLAHPAKIDETVSNKVADLSQIPSKHIATPHGSYSQRNNFDEHCKVTHPAEIEDRQTYKSVPDKVTDLSQIPSQHTAATLHGADGIHKCPVCAKTFITRSYLDRHCQTAHPSFKKRSKRVDTSKTKNIYECPSCPMGFINRSNFELHCKIAHPQAGDTNTNPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -