Basic Information

Insect: Polietes domitor
Gene Symbol: -
Assembly: GCA_947397865.1
Location: OX377618.1:54818633-54823494[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00025 0.046 15.9 0.3 2 23 242 264 241 264 0.93

2 8 2.7e-06 0.00051 22.1 0.6 2 23 272 294 271 294 0.97

3 8 0.00011 0.019 17.1 0.5 2 23 314 336 313 336 0.95

4 8 0.00049 0.09 15.0 0.4 2 23 560 582 559 582 0.93

5 8 1.1e-05 0.0021 20.1 0.6 2 23 590 612 589 612 0.97

6 8 8.4e-05 0.016 17.4 1.9 3 23 633 654 631 654 0.95

7 8 2.8e-05 0.0051 18.9 2.8 1 23 670 693 670 693 0.95

8 8 1.8 3.2e+02 3.8 1.1 9 23 701 717 700 717 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00025	0.046	15.9	0.3	2	23	242	264	241	264	0.93
2	8	2.7e-06	0.00051	22.1	0.6	2	23	272	294	271	294	0.97
3	8	0.00011	0.019	17.1	0.5	2	23	314	336	313	336	0.95
4	8	0.00049	0.09	15.0	0.4	2	23	560	582	559	582	0.93
5	8	1.1e-05	0.0021	20.1	0.6	2	23	590	612	589	612	0.97
6	8	8.4e-05	0.016	17.4	1.9	3	23	633	654	631	654	0.95
7	8	2.8e-05	0.0051	18.9	2.8	1	23	670	693	670	693	0.95
8	8	1.8	3.2e+02	3.8	1.1	9	23	701	717	700	717	0.88

Sequence Information

Coding Sequence: ATGAATATAAATAACAAAAGCAAATGTCGTACGTGTCTAAAGCCAAACACAACGTTGAGACTTTTAAGCACAAAACCAAAAATGTTTAAAATAAATAAAACATATATGGAGCTACTGAAATTTGTGGCCAATGTAGAGATTGATGCAGACGATGAAAAAGGTAATAGGGCACAGGGCATATGCTGTAGCTGTTGTAAAAGAATACGCGAATCCTATACCTTCATCAAACAAGTTCGAAAATGTAATAAACATTTTTTGAAGGGCTTGTGGGAGAAACCAGAGCGAATAAACTCAGTGGCAAAGAATGCTAGAGCAGAAGACGATAAATTCGAACCAGCCATTAAGCAAGAAGTCGATAAATTTGAAGATGACTTTTCGGGTCAACCAAAAGAGGAGATGGATGCAGACACACGCAGCTCCATTTCGAATGATAATTTTGACCATCTGCCTGCGGAATTGACTGATACAGATACGCAACACTCAGCATGTAAAGAAACAAATGCCGACGTTGCAATAAAAACAGAATCGGAGCATATGAATGCTCTGGATGAATTACTACCTGTATGCATTTTAAATGAGACCGCATTTACCGAGGAAAATATAAACAATGATAGTGATTTACCTAAACGACCAGAGAGCAGTAACTACGATCCCTTGGACAGCAACGAATTGGACGAAGAACCGAAATCGGTGTCTGTCGACGACGACAAACTATTGCCAGTCCGCTGTGATGAATGTGAAAGAGTCTTCCCGAACTCGATCTTATTGAATCGCCACAAAAAAGACACACATATACCGAATGAACTGAAAATACAATGTCCCAATTGCCCGGTTAGGTTCAGTCGCCGTTACAACATGTATGCCCATATGAGAACTTTTCATAAAACAGAGACGGTAAGGAAACATCAAATACAGCCTAGAAAACTGATTAAAACAGATGTGTGTAGCCAGTGTAATCGTGCATACAGCGACAAATACAAACTATTGGCACATATCAAAAATAAGCACGGTCCAGAGAGTAAACCCAAAAAGGAAAAACAGCCACCAAAACGGTATCTCTGTACACTGTGTGGTTTGACGTGCAGCATTGATAAAACTTACATGGATTTATTAAAACACATAACACAACTAGAGATGGATCCTGAAACCGAGTGCAAAGTTCCACAAAGAATATGTGGTGGGTGTAGTAAAAGATTACGAGAGTCGTATTCTTTTATTGAACAAGTCAACAAATGCTATCTCTATTTTGTTAATATGGTAGACAGTCCTTCAGAGAAATTAGATGAAAGCTGTGCCATCGAGAATTTGGCCTTGCACGAGGAGCCATGCATTAAGCAAGAGACGAAGGCGGCTCATGAGGAATCTACGAAAGAGCCAAAGGAGAAATTGGGTGCAAAAGATCTCTTTAACGATACTTTAACTAGAAATGTGGATAATTCCGATGTATTGGAATTGCCAAAGGATATTACACCGAAGGATGTCTCCGAAACTGAAAGTAAGCTCGATCAAAAAGAGATGTATCCGGAGTGTGTGATAAATGAAACAGAAGTTGATGAACACTCTGCCAACTCAGACAATGAGTCAAGTACAGACGAAAGTAGTCACGGAGATCCCTTAGATAACGAAGCAAACGAAGATTCTGGCCCGGCCTCTGTAGAGGATGATATGTTACCTGTTCGATGTGATGAATGCGAGAGAGTTTTTGCGAATTCGTTGCTGTTAAACCGACACAAAAAAGACACCCACTTGCCGGATGAACTGAAAATACAATGCCCCAGTTGTCCGGTGAAATTTAGTCGGCGCTACAATATGTATGCCCACATGAGAACATTCCACAAATCCGAAACAGTTCGAGAACATCAGATTCAACCCCGGAAATTAACCAAGACTGATATATGCGATCAATGCCATCGCTCGTACAGCGATAAGTACAAATTGATGGCGCATATCAAAAATAAACACGGACCTGGTAGTGTCCCGAAGAAACCGAAGCAACCACCGAAACAGTATCTGTGTACGCTGTGTGGCTTGACATGCACCAATAAATCCAATCTGGAAATACACTATAGAAGGCGAcacacgggcgaaaagccattcaaTACCTTCACACAAAGTAATTCCCTAAAACTACATCAAAAGAAGAAAAAGCATTTTCCGGAAAACACACAGAATGTCGAGTTTACCCATGCCATAAATACATTCCTATAG
Protein Sequence: MNINNKSKCRTCLKPNTTLRLLSTKPKMFKINKTYMELLKFVANVEIDADDEKGNRAQGICCSCCKRIRESYTFIKQVRKCNKHFLKGLWEKPERINSVAKNARAEDDKFEPAIKQEVDKFEDDFSGQPKEEMDADTRSSISNDNFDHLPAELTDTDTQHSACKETNADVAIKTESEHMNALDELLPVCILNETAFTEENINNDSDLPKRPESSNYDPLDSNELDEEPKSVSVDDDKLLPVRCDECERVFPNSILLNRHKKDTHIPNELKIQCPNCPVRFSRRYNMYAHMRTFHKTETVRKHQIQPRKLIKTDVCSQCNRAYSDKYKLLAHIKNKHGPESKPKKEKQPPKRYLCTLCGLTCSIDKTYMDLLKHITQLEMDPETECKVPQRICGGCSKRLRESYSFIEQVNKCYLYFVNMVDSPSEKLDESCAIENLALHEEPCIKQETKAAHEESTKEPKEKLGAKDLFNDTLTRNVDNSDVLELPKDITPKDVSETESKLDQKEMYPECVINETEVDEHSANSDNESSTDESSHGDPLDNEANEDSGPASVEDDMLPVRCDECERVFANSLLLNRHKKDTHLPDELKIQCPSCPVKFSRRYNMYAHMRTFHKSETVREHQIQPRKLTKTDICDQCHRSYSDKYKLMAHIKNKHGPGSVPKKPKQPPKQYLCTLCGLTCTNKSNLEIHYRRRHTGEKPFNTFTQSNSLKLHQKKKKHFPENTQNVEFTHAINTFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -