Pdom044958.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- -
- Assembly
- GCA_947397865.1
- Location
- OX377621.1:17810120-17815952[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.042 7.7 8.9 9.7 2 23 646 667 645 667 0.97 2 11 0.0015 0.27 13.5 0.2 1 23 673 697 673 697 0.95 3 11 7.7e-05 0.014 17.5 1.2 1 23 704 729 704 729 0.98 4 11 7.3e-05 0.013 17.6 4.0 1 23 749 771 749 771 0.96 5 11 0.00026 0.048 15.8 1.3 1 23 779 803 779 803 0.97 6 11 0.003 0.54 12.5 0.7 1 23 809 831 809 831 0.97 7 11 0.092 17 7.8 0.5 1 23 837 860 837 860 0.87 8 11 0.018 3.3 10.1 1.4 1 23 871 893 871 893 0.95 9 11 0.00037 0.068 15.4 0.2 3 23 901 921 899 921 0.96 10 11 1e-05 0.0019 20.3 0.3 1 23 926 948 926 948 0.98 11 11 0.0034 0.62 12.4 1.2 1 23 954 976 954 976 0.98
Sequence Information
- Coding Sequence
- ATGCAGCGCATTATGGCATCACAAGCATCAAATCCTAAACAGTTTTATAGAACAAATATACTCTTATTCGATATGATATTTGATGTTTATCCACTGAACTCAAACGAAACTATCGACTTTTATTCATGCTTCGCTTCGCCTCAAGCTCAAGCATGTGTTAGCAAAGAAATTGAATCACTACAAATACGCAAGTCTCTCCGACTTGACGACAACTGTGGTGTTTTCCAAGCAGAATTACTGGCTATTGAGAGGGCAGCAAGATTTCTATCGAGTGAGAACATTCCGGTGAATACGGATATAAACTTCTACATAGATAGTCAGGCAGCAATGAAATCAATCATGTCACACATTGTCAAATCCAGGCTTGTGCTGAGTTGTAAACGCTCACTAGATGACCTCAACAACCATGTCGTCCGTCTTTGCTGGGTTTCCGGACATAGCAATGTCAAAGGAAACGAAATAGCAGATGAATTGGGTAGACATGGTTCGATCGTCTGGACAACATGGCCAAAGAACGATAGGAGCAAAACCAGAACTCTATTGGAGCTAAACAAAGCAGAAATTCGAACACTGATAGATGGCAGTTGGACATCGAAGATCACTGTCGATTATGTGAGGATGAGGACGAGAAACTTGGAACCTATTCCTCAGGTTGAAAACAATGAAATGTATAGCCGAGATATGTTTGAAGAAAATTTAATAGAGGAAGTAAAAAAATATGAATTTATTTATAATCCCACACATCCTGAATATAAGCTTAGATCAAAAAAAGAGACTATTTGGGTTGCAATTGCCTCCTCCTTAGGGAATACAGTTCCACAATGTCGTCAGCGTTGGAAGGCCGTGAGGGCGGCGTACCAGAAAATTTTAATAAGATCCAATGATGGCGCCGAATATACATCTAAATGGAAACACTTGGACACAATGTCCTTTATGAAGAATCACTTAGATCTAAAACCAAAGATATGTGTAGAAATACCCGACGATGACTCCTACGTTGAAAAGCTAATAGAAGAAGTGAAAAAATATGAATGTGTATATAATAATGCACATCCTGATCATTGGAAAAGATCCGTAAAAGTGGTAGTTTGGTCATTGATTGCAGCTGCTGTAGGCAAACCAGTCCGACAATGCAAGACACGATGGTATAGTTTGCGGGATCGATATTTAAAGGGATATCTGAAAATGGCAACAACCAATGCCGACGAAGAAGACACATCTAAGTGGAAGTACAATAACGAGATGTCTTTTATGAAGAACTACATTCCACCGAAATTGTATGATATCTTATTTGGACAAATAACATGTGAAATTTCCAAAAAGGATATGTTTTGTCGTGCATGTATGGGCCAAGTATTGAATGAAACCGACGAGCAGTGCTCGAAGAGTTATAACATCTTTCAAACATTGGATTTGTTAGATAAACTAATGAATTGTTCCAACCTGCAAATTACTTCATGGGATGAATACCCGCATTCGGTTTGTGAGAAATGTTATGGGCAAATTTTGGATTTCCATCAGTTCCAGATAATGTGTCGGGATTCGCTGGAAAAGTTCAATGAAATACAAAAAGACCGAACACAAGTGAAGTGTGAAAATGATTTGGAGGAGACTCCAGGCAAATCGGTTAATCCTAAATATATGGATAACCAAACAACTATTAAATGTGAAAATTATTTGGAGATAACGCACGATGGTGATCCTTTGAATGAGGACATAAGCTTAGATTCGTTATTGGAAGAAAATGAAAGTTGTGACCAGGAAGCATCAACTCATTGTGAGGAGTATGCTAACGTAGAAATAGTGAAACTTGAAAAGTCTCAGTTAAAAGTCGATGATGATACACTCGAAGATCCCGCTGACAATGAAGAGTCTGTTTCGGAGGGTATCGATACATCAGACATGAAAAGAAAATCCCACAACAAAGTTGTACTTAAATGTCACATCTGTCCTAAAAGCTTTCATATGCAACATTGCTTCGATGCCCATCAGCGAAGGCATATGGGTTTATCTGGATATCCCTGCTCTTATCCAAATTGTGACCGCGCTTACAATCGCGTTACGGACTTAATAAGACATCAAAATGACCATAAAGGCATCTCCAACGCTTTTAAATGCAACATCGACAATTGTGACAAGGTATTCAGACGATATGCTGGCCTAAACTATCACAAGCGTAAGGATCACAAATGTGGAAAGGAAATAAAACCAAAGACAAGGGACATTGACGAAAGCTCTGAGACCTTCGTTTGTGAAACGTGTGGTAAAGTTTTCAAGACTAAATTTTTACTCAAGAATCATTGCATGACACACGTCGATGAGTCCCAATGGCCGTTTGTCTGTAATGTGGAAGGCTGCTTGAAAAGATTTCGCATGAAGTACAAGTTGAAAATTCACATGCAGCGTCATGCCGGTATTAAGAAATATGTATGTCCTCATTGCGGCATGCGAAAAGTCACACGAAATGAACTTAATATACACATCAACTATCATACGTTCGAACGAAAATATCCCTGTCGAATTTGTTCGAAAGTGTTCAACAGTGTGGGTAGAGTGAGCATGCATATTCACCAGGTTCACGAAGGACGTACTCTGCGAAAACCAGGTTCGTTTCCGTGTGGTTATTGTGAGCGGAAATTTAGTACACGGCAAAACGAAAGAGATCATGAAAAGAGTCACACCGGCGAGGGCTTGCTTGCGTGTGAGGAATGTGGTAAAAGTTTTTTAAGTCCACAGCGTCTAAAGATGCATATGAATATGCATTTTACAAAACGTTATGTCTGCGAAGAATGTAGTAAGAGATTCACTTATCCCGGGGCTTTAAGAGCACACAAGAAGCTGCATATCGAATCAAAACCATATAGTTGTAAGGAATGTGGCCAAGGATTCAGATGGCCGGGTTCCTATTACAGGCACAAGAAGAAGCATCTAATGGATAAGAGAAAGAGTAGTGAGCAGCAGGAAATCCAAGAAGACGATGACAACTTGGATACTCTGGTACAAGAATCCACATAA
- Protein Sequence
- MQRIMASQASNPKQFYRTNILLFDMIFDVYPLNSNETIDFYSCFASPQAQACVSKEIESLQIRKSLRLDDNCGVFQAELLAIERAARFLSSENIPVNTDINFYIDSQAAMKSIMSHIVKSRLVLSCKRSLDDLNNHVVRLCWVSGHSNVKGNEIADELGRHGSIVWTTWPKNDRSKTRTLLELNKAEIRTLIDGSWTSKITVDYVRMRTRNLEPIPQVENNEMYSRDMFEENLIEEVKKYEFIYNPTHPEYKLRSKKETIWVAIASSLGNTVPQCRQRWKAVRAAYQKILIRSNDGAEYTSKWKHLDTMSFMKNHLDLKPKICVEIPDDDSYVEKLIEEVKKYECVYNNAHPDHWKRSVKVVVWSLIAAAVGKPVRQCKTRWYSLRDRYLKGYLKMATTNADEEDTSKWKYNNEMSFMKNYIPPKLYDILFGQITCEISKKDMFCRACMGQVLNETDEQCSKSYNIFQTLDLLDKLMNCSNLQITSWDEYPHSVCEKCYGQILDFHQFQIMCRDSLEKFNEIQKDRTQVKCENDLEETPGKSVNPKYMDNQTTIKCENYLEITHDGDPLNEDISLDSLLEENESCDQEASTHCEEYANVEIVKLEKSQLKVDDDTLEDPADNEESVSEGIDTSDMKRKSHNKVVLKCHICPKSFHMQHCFDAHQRRHMGLSGYPCSYPNCDRAYNRVTDLIRHQNDHKGISNAFKCNIDNCDKVFRRYAGLNYHKRKDHKCGKEIKPKTRDIDESSETFVCETCGKVFKTKFLLKNHCMTHVDESQWPFVCNVEGCLKRFRMKYKLKIHMQRHAGIKKYVCPHCGMRKVTRNELNIHINYHTFERKYPCRICSKVFNSVGRVSMHIHQVHEGRTLRKPGSFPCGYCERKFSTRQNERDHEKSHTGEGLLACEECGKSFLSPQRLKMHMNMHFTKRYVCEECSKRFTYPGALRAHKKLHIESKPYSCKECGQGFRWPGSYYRHKKKHLMDKRKSSEQQEIQEDDDNLDTLVQEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -