Pdom045155.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- -
- Assembly
- GCA_947397865.1
- Location
- OX377621.1:21164435-21167542[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00022 0.041 16.1 0.4 2 23 360 381 359 381 0.97 2 13 0.002 0.36 13.1 0.6 1 23 387 411 387 411 0.96 3 13 2e-05 0.0037 19.3 0.6 1 23 418 443 418 443 0.97 4 13 0.029 5.4 9.4 0.1 2 23 463 484 462 484 0.90 5 13 0.0065 1.2 11.5 2.2 3 23 495 516 492 516 0.90 6 13 0.0003 0.055 15.7 1.1 1 23 522 544 522 544 0.97 7 13 0.0025 0.46 12.8 0.9 1 23 550 573 550 573 0.96 8 13 1.6e-05 0.003 19.6 3.3 1 23 597 619 597 619 0.96 9 13 0.00017 0.031 16.5 0.3 1 23 626 648 626 648 0.98 10 13 3.9e-05 0.0072 18.5 0.3 3 23 657 677 655 677 0.96 11 13 0.0056 1 11.7 0.1 1 23 684 706 684 706 0.96 12 13 2.2e-06 0.00041 22.4 1.5 1 23 712 734 712 734 0.97 13 13 0.0055 1 11.7 0.7 1 23 741 763 741 763 0.98
Sequence Information
- Coding Sequence
- ATGTCGAGCCAAGAATTGTTGTTTAACAAAAAATTGATAGAAGAAGTCAAGAAGTATGATCTTATATACAATACAGAGCATCTTGAGCATACCAATATATCAATCATGCAACAAACATGGTCTGCAATAGCATCTAGTTTGGGTTATACAGTCCAGAAGTGTAGGCATCGCTGGCAAAGTTTACGTCGACGGTATGTAAGTGAATATTCGAAAATAACTTCAGGTATTAAGGCTGTTGTAAGCACATCACATTGGAAGCACTTTGATGAAATGTCCTTTTTGCAGCACTACTATATGGATCAAAGCCGAAATGTTCTGGACATGTACCACCAAAGAGACCTACTATGCCGGGCTTGTTTGGACAACTTTATAAATTCATACGCTGAGCGGAGCTCCGAGAGATACAATATATTTGAAAACGAAAATTTGGCGGAAAAGTTGATGCAGTGCACTAACCTACCAATTGTTCCTTGGGATGAATACCCACATTCCGTATGTGAGAAATGTTACAAGAAAGTTTTAGATTTCCATAAATTCCAAGTTATGTGTCGCGATTCCCAGGAAAAGTTTAATATGGTGTTGGAAAGTCAAGCAAGCGTAAAATGGAAAGCTGGCAACAACATTGATTATAAAGATGACAATTCAATTTTGATCGAAAATCCTACAAAATCAAAGAGCATGGACTTATTCTATGCAATGCCAGAACATCAATTGCAAACTGATGACGAAGATGAAATACAAGAGACTTTTAATGTCGATCCATTGGCTGCGTGTAGCAATGAAGATGTGGTATTGGAAGAAAAGCATGCAGTTGAAAATAATCAAAAAGTAGAGCAGACTTTGATAGAAAAAGTGGCAACAACAAAAATTATAATTAACGATCGTAAATCGCTAGACATTGACGACATTGTGGATAACGTTGAGATGAATGAACTGGAAGAAACATCTAACACAGAGGTTGGTGATGTTTATAATGACATGGACTCTTCTGAAAATATCTCCGATAATGAATCGTTTATTTCACATGACTGCGAAGCATCAGACTTGAAAGAAAAAACTCCCAGCAAAATTCGCCTCAAATGTGACATCTGTCCGAAAACGTTTCTGCTCCAAAATTCTTTAGAAGCTCACCAGCGAAGACATCAAGGTTTATCAGGCTATCCATGTACCTATGCAAATTGTGAGCGAGCTTATAATCGCTTTACTGACTTAAGAAGACACCTCAATGACCACGAAGGCATACCCAATGTCTTTAAATGCGACATCGACAATTGTGATAAGGTATTTGCACGCTACGGAGGCCTAAACAAACATAAGCGTAAAGACCACAAATACGGCAAGGAAGTGAAGAAATCCACTCAGAAGGAACAAAGTGCCAAGAATTGGATATGCGAAACGTGTGACCAAGTTTTATCTAGCTCTGCTACGCTTAAGATTCATAGCTTCTTACATGTCGACAAAGCCAAATGGCCCTATGCATGCTGTGAGAAGGGCTGCTCGAGAAGGTTTCGAGCCCTGTCAGAACTGACAATACATAGAAAACGTCATGCCGGTATTAAAAACTATGTTTGCCCCCACTGTGGCATGCGCAAAACTACAAGCAGTGAGCTAAGGATTCACATAAATTTTCATACATTCGAACGAAAATATCCCTGTCGCATCTGTTCGAAAGTGTTTAAAAGTGTGGGAACGGTGAGCACGCATATTCACAAGGTTCATGAGGGAAAGCGCAACGCAACCAGCACACTCCAGAACAAGTCGAAAGGAGATACAGAAAAACCAAAGCCGCATGCATGCAAGGAATGCGGCAAGACATTCGCAAGTACAACGGGCTTAAAGCAGCACATGCATATGCATGTGAAAGGTGAAAAAGCATATGTTTGTGACCAATGCGGTGAACGGTTCAAATGGCCAAGTACGTGGAAGCTGCATATGAAGAGTCACTCGGAAGGAGGAAGTCTCCTTGCATGTGAGGTATGTGGCAAAACATTTGCAACTGCCACACGTTTATCGGTACATATGCATGTACATTTGAATGGCGAAAAACCGTATGCTTGCGAGAAATGTGGTGAACGATTCAAATGGCCGGGTCCCTTGAAGATACACGTGAAGAATCATTTGGAAGAGAATCTTCATGTCTGCGATGAATGTGGTAAACAATTCAAATATCCGGATAATTTAAGGGTACATAAGAAGTTGCATGTGGAGGGGTCAGTACCGTATACATGTGAGGAGTGCGGCCAAGGATTCAGATGGCCGGGCTCTTATTACACTCACAAGAAAAAACATGTGGGACGAAAAATAGAAAATGTTCTGGTAGATGAAGAAATCGTTGATCCATAG
- Protein Sequence
- MSSQELLFNKKLIEEVKKYDLIYNTEHLEHTNISIMQQTWSAIASSLGYTVQKCRHRWQSLRRRYVSEYSKITSGIKAVVSTSHWKHFDEMSFLQHYYMDQSRNVLDMYHQRDLLCRACLDNFINSYAERSSERYNIFENENLAEKLMQCTNLPIVPWDEYPHSVCEKCYKKVLDFHKFQVMCRDSQEKFNMVLESQASVKWKAGNNIDYKDDNSILIENPTKSKSMDLFYAMPEHQLQTDDEDEIQETFNVDPLAACSNEDVVLEEKHAVENNQKVEQTLIEKVATTKIIINDRKSLDIDDIVDNVEMNELEETSNTEVGDVYNDMDSSENISDNESFISHDCEASDLKEKTPSKIRLKCDICPKTFLLQNSLEAHQRRHQGLSGYPCTYANCERAYNRFTDLRRHLNDHEGIPNVFKCDIDNCDKVFARYGGLNKHKRKDHKYGKEVKKSTQKEQSAKNWICETCDQVLSSSATLKIHSFLHVDKAKWPYACCEKGCSRRFRALSELTIHRKRHAGIKNYVCPHCGMRKTTSSELRIHINFHTFERKYPCRICSKVFKSVGTVSTHIHKVHEGKRNATSTLQNKSKGDTEKPKPHACKECGKTFASTTGLKQHMHMHVKGEKAYVCDQCGERFKWPSTWKLHMKSHSEGGSLLACEVCGKTFATATRLSVHMHVHLNGEKPYACEKCGERFKWPGPLKIHVKNHLEENLHVCDECGKQFKYPDNLRVHKKLHVEGSVPYTCEECGQGFRWPGSYYTHKKKHVGRKIENVLVDEEIVDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -