Pdom065602.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- Prdm2
- Assembly
- GCA_947397865.1
- Location
- OX377620.1:177239511-177247966[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.08 15 8.0 0.1 2 23 270 292 269 292 0.88 2 20 1.7 3.1e+02 3.9 3.7 6 23 302 319 296 319 0.86 3 20 0.00033 0.061 15.5 6.1 1 23 325 348 325 348 0.96 4 20 8.9e-05 0.016 17.3 2.4 1 21 356 376 356 377 0.96 5 20 0.0016 0.29 13.4 1.0 1 23 395 418 395 418 0.94 6 20 0.00039 0.073 15.3 0.3 2 23 428 449 427 449 0.96 7 20 0.42 78 5.8 3.7 1 23 455 478 455 478 0.95 8 20 0.00099 0.18 14.0 1.0 1 23 496 518 496 518 0.98 9 20 0.026 4.7 9.6 0.5 1 23 524 547 524 547 0.96 10 20 0.0084 1.5 11.1 1.1 1 23 567 589 567 589 0.98 11 20 0.96 1.8e+02 4.6 0.1 2 22 914 934 913 936 0.87 12 20 0.25 46 6.5 5.4 6 23 946 963 940 963 0.88 13 20 0.0052 0.95 11.8 4.2 1 23 969 992 969 992 0.95 14 20 0.031 5.8 9.3 0.7 1 17 1000 1016 1000 1021 0.83 15 20 0.00061 0.11 14.7 0.7 1 23 1042 1065 1042 1065 0.93 16 20 4.2e-06 0.00078 21.5 0.4 3 23 1080 1100 1079 1100 0.97 17 20 0.00053 0.098 14.9 7.5 1 23 1106 1129 1106 1129 0.98 18 20 0.0041 0.76 12.1 3.0 2 23 1148 1169 1147 1169 0.97 19 20 0.00027 0.049 15.8 0.2 1 23 1175 1198 1175 1198 0.95 20 20 0.0012 0.22 13.8 0.4 1 23 1217 1239 1217 1239 0.98
Sequence Information
- Coding Sequence
- ATGTTCCAATCGATATCCTGCGAATTGTGCATCAACATATGCAATGGCCACCGCAGACTCTATGACGACGATGGCCATAGGAATGAGGTGTATGCGATGACGAAAAAATACTTTAGTCCAATGCTGGAAAGTGTCGACAATATGGCGGTTATTTGTCTGGAATGCTGGCGTCACATTTTCGAATTTCACACATTCCAACAGTCCATTAGTTTGGCCCATGAAATTGGCCAGTTCAGCAAACGAACTGCGGAAGTTGTAAAATCAAAAGAAGAAAACCTGGGGCTGGACGAAGAAGAATTCATCACTATCGCTGCAAAGTCAGTAGTGATTGATGAACAGTGGCCAAGAGAAGTCAGTTCGGAGGAGAATGACAGCCATGGTGTTGAGGACTTCACAAATGCCACCAAGTCAGAGTTTTCGATAGATGAACAATCTAGAACTAGTGTAAAATCTGACATAGCCGAACCGATGGACGACCACGAAAGTGACAGTCAACAAACTGGAGCTAGTTTGGAAGCCGTTTCATTAGAGGATCCTGAAGAAAGCGACATGGCAGACGAATGGGACGATCTCGTTGATACAAATGATGCTTTTGATGTTGGACAAGGTGACGCTTCATCGGAATACCGGCCAGAATCCGATGGAAATTTCAGTTCAGTAACCGAAAGTGCCGGGCTTCCCAAGAAAAAACATTTGAAACCATCTCTTCAAAGTGACCAGCTGCCAACGACGTCCAGAATAAAACTAAAGCGACCGGAAACAGTCCAGGAATATGATGACTTGATAGCCCAGTGGAGGCCAAATTTAGAATGTGTGGAATGCGGTGAGACAAGTCCAAGTTTTTCGCTCTTACAGCAACACTTCGCTGAGCAGCATCCCACTGCCAAGTGCCACATTCCATGCTGCGAACTGAAGCTGTACCACCGCTACGAACTGGAAAAACATATACGCGTGCACACTGAGCCGAAACCTTTCAAGTGTGAACAGTGCGATCGGTGTTTTGCCACAAAGAAGAGCTTGGAGACCCATCATTATAGGATACATTATGGCACGAGCAAAAATGGCTTCCAATGTCCGAAATGTTCAAAGACCTACTCAAGAAAATATGTGCTGAAATATCACATGAAATATCGCTGCAATATTGATGGCAAGCAGTTGACGAAGCTTGCCGCCAGGGGCAAACATACCTGCGGCGAATGTGGCAAAGTGACGACCACGCTACAACTGTTGCAAGATCACACGGTAAAGTTCCATGCGACACCGGGTAAAATTCCCACAATGACGTGCAGCATTTGTGATAAGGTCTACACTAATGCGGTGGCGTTTCGTGAACACAAGTCCAGCCACACGGGAGAGCCTCTTTACCATTGTCCCTTTTGCCCCAAAGAATTTACGCTGGGCAGCTGCTACTATGGCCATTTGAAGCGGTGGCATCGCCAAGAATGGTCCGCGAAACTGCGAGAGAAAGCCCAACTCAAAAAGATGTACAAGTGTACGATTTGCGAGTGTACTTACGATATTCGGGGGGACTTACGCGTACATATGGCCAAACATACGGGCAAAGCTTTGTATACGTGTGCGTTTTGTCCCCGGACATTTATATTTCGTGTGGTGTTTGCTAAACATTTGCAGCTGATGCACCCCAAGGAATGGGAGGAGAAAGGGGAGGCAAGTGATGAGCTCGCGTCGCGAAAAGTCTTTAAGTGTGCCAAGTGTGAGGAGGTCTTCCAGACTCGCATTAGGTGGCGTAAACACCAGGACACGCACCCGGGCCCGTGTGAGGAGGCCTTCCAGACTCGCATTAGGTGGCGTAAACACCAGGTCATGCACTTGGTTGTGCAAGATCGTCAATGGTGCGTGCAAATAGGACTGATGTTGACGGATTTGGCTTCGATGCGGATTGTGGCTCGACACTCGTCCAGTGCAGTGCATGTCAAAGCGCCAAATGCATCCAGGAGCATGTTCCAATCAATCTCCTGCGAATTGTGCATCAATATTTGCAATGGCCACCGCAGACTCTATGACGACGATGGCCATAGGAATGAGGTGTATGCGATGACGAAAAAATACTTTAGTCCAATGCTGGAAAGTGTTGACAATTTTGCGGTTATTTGTTTGGAATGCTGGCGTCACATTTTCGAATTTCACACATTCCAACAGTCCATCAAACTGGCCCATGAAATTGGCCAGTTCAGCAAACGTACTGCGGAAGTTGTAAAATCAAGAGAAGAAAACCCGGGGCTGGGTGAAGAAGAATTCACCACTATCGCTTCAAAGTCAGTAGTGATTGATGATCAGTGGCCAAGAGAAGGCCGTAGGGGGGAGAATGACAGCCTTGGGCCTGAGGCTAACACAAATGAAGACAGCCAAGAAGCTGGAGCTAGTGTAAGATCTGAAAGAGTCGAACCAATGGACGATCATGAAAGTGTTTCCTGTAATGGCGGCCAACAATCTGCAGCTAGTTTGAAATCAGACGATCCTGATGAAACCGAAATGGCAGACGAATGGGACGATCTCGTTGATATAACGGATGACATCATTGGAGAATATCAGCCAGAATCCCAAGGGGATTTCAGTTCAGACGCTGAAATATCAGTAACCGAAAGTGCCGACGGCCCTAAGACACTTCCAAATCTTGGCGCTGGCGAACAGTTACCAACGACATCCCGCCTAAAATCAAGGCGACCCCAAACAATCCAGGAATATGATGACCTGATCGCCAAGTGGAGACCAACATTAGAATGTGAGGAATGCGGTGACCCGTCTCCCAGTTTCTCACAGCTACAGCAACACTTCGCTGAGCAGCATCCCACTGCCAAGTGCCACATTGTGTGCTGCGATCGGAAGTTGTCGCACCGCTACGAACTGGAAACTCACATACGCTCTCACATTGAGGCTAAGCCCTTCAATTGTGAACAGTGCTATAGACGTTTTACCACCGCGAAAAGTCTGGAGACCCATCATTATAGGATGCATTATGGCACGAGCAAAAATGGCTTCCAATGTCCGAAATGTTCAAAGACCTATGCCAGAAAAGATATAATGACCTATCATGCGAAATATCGCTGCAAAGGCGACAGCAAACAAGGAACGTCGGAGCAAGCTGCTGCCGCCGACAACAAGCATACATGCGGCGAATGCGGCAAAGTGTTGACCACGTCACGGCTGTTGCAGGATCATGTGGTTAAGTTTCATGCGGCCAAAAAAGAACGTCCGGCCAAACCCTCCAACAACATATGTAACATTTGCGATAAGGTCTTCACACGTAGGATCACTTTGCGCGAACACATGGGCACGCACACGGGCCAGCCCATGTACAAGTGTCACTATTGCCCGAAGACATTTAAACTGCGCAGCACCTACTATCATCATTTGAATCGTTGGCATCGCCAAGAATGGTCCGAGAAACTGAAGCAGAAAGCCGAACTCAAGAAGACGACAAAGTGTTCGTTGTGCGAGTGTGTTTGCGACAATCAGGATGACTTGCGCGTCCATATGGCCAAACATGCGGGCAAGCCTTTGTACACTTGTCCGTTTTGTCCAAGGATATTTATATTTCGTGCTGGTCTCACTAAACATTTGCTACTGTTGCACTCCCGGGAATGGGCGGAGAAAAAGGAAGCCAGTGATGAGCTGGGCCGGAAAATCTTTAAGTGTGCCACGTGTGAGGAGGGCTTCAACACTTCGAGGGCGTGGCGTAATCACCAGGACACACACTAG
- Protein Sequence
- MFQSISCELCINICNGHRRLYDDDGHRNEVYAMTKKYFSPMLESVDNMAVICLECWRHIFEFHTFQQSISLAHEIGQFSKRTAEVVKSKEENLGLDEEEFITIAAKSVVIDEQWPREVSSEENDSHGVEDFTNATKSEFSIDEQSRTSVKSDIAEPMDDHESDSQQTGASLEAVSLEDPEESDMADEWDDLVDTNDAFDVGQGDASSEYRPESDGNFSSVTESAGLPKKKHLKPSLQSDQLPTTSRIKLKRPETVQEYDDLIAQWRPNLECVECGETSPSFSLLQQHFAEQHPTAKCHIPCCELKLYHRYELEKHIRVHTEPKPFKCEQCDRCFATKKSLETHHYRIHYGTSKNGFQCPKCSKTYSRKYVLKYHMKYRCNIDGKQLTKLAARGKHTCGECGKVTTTLQLLQDHTVKFHATPGKIPTMTCSICDKVYTNAVAFREHKSSHTGEPLYHCPFCPKEFTLGSCYYGHLKRWHRQEWSAKLREKAQLKKMYKCTICECTYDIRGDLRVHMAKHTGKALYTCAFCPRTFIFRVVFAKHLQLMHPKEWEEKGEASDELASRKVFKCAKCEEVFQTRIRWRKHQDTHPGPCEEAFQTRIRWRKHQVMHLVVQDRQWCVQIGLMLTDLASMRIVARHSSSAVHVKAPNASRSMFQSISCELCINICNGHRRLYDDDGHRNEVYAMTKKYFSPMLESVDNFAVICLECWRHIFEFHTFQQSIKLAHEIGQFSKRTAEVVKSREENPGLGEEEFTTIASKSVVIDDQWPREGRRGENDSLGPEANTNEDSQEAGASVRSERVEPMDDHESVSCNGGQQSAASLKSDDPDETEMADEWDDLVDITDDIIGEYQPESQGDFSSDAEISVTESADGPKTLPNLGAGEQLPTTSRLKSRRPQTIQEYDDLIAKWRPTLECEECGDPSPSFSQLQQHFAEQHPTAKCHIVCCDRKLSHRYELETHIRSHIEAKPFNCEQCYRRFTTAKSLETHHYRMHYGTSKNGFQCPKCSKTYARKDIMTYHAKYRCKGDSKQGTSEQAAAADNKHTCGECGKVLTTSRLLQDHVVKFHAAKKERPAKPSNNICNICDKVFTRRITLREHMGTHTGQPMYKCHYCPKTFKLRSTYYHHLNRWHRQEWSEKLKQKAELKKTTKCSLCECVCDNQDDLRVHMAKHAGKPLYTCPFCPRIFIFRAGLTKHLLLLHSREWAEKKEASDELGRKIFKCATCEEGFNTSRAWRNHQDTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -