Pdom065709.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- -
- Assembly
- GCA_947397865.1
- Location
- OX377620.1:178481933-178484475[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.1e-06 0.0015 20.6 0.1 1 23 184 206 184 206 0.96 2 13 1.9e-05 0.0035 19.4 3.7 1 23 212 234 212 234 0.98 3 13 3.3e-05 0.0061 18.7 0.3 1 23 340 362 340 362 0.96 4 13 0.00016 0.03 16.5 2.9 1 23 368 390 368 390 0.96 5 13 3.9e-06 0.00071 21.6 0.6 1 23 404 426 404 426 0.98 6 13 0.0078 1.4 11.2 1.4 1 23 435 458 435 458 0.93 7 13 0.00017 0.032 16.4 4.7 1 23 464 486 464 486 0.98 8 13 0.00019 0.035 16.3 0.1 2 23 493 514 492 514 0.96 9 13 7e-08 1.3e-05 27.1 0.5 1 23 520 542 520 542 0.96 10 13 0.12 22 7.5 3.9 1 23 548 571 548 571 0.90 11 13 4.4e-06 0.0008 21.4 6.0 1 23 577 599 577 599 0.98 12 13 3.9e-06 0.00072 21.6 0.6 1 23 605 627 605 627 0.99 13 13 5.6e-05 0.01 18.0 0.9 1 23 633 655 633 655 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCGGACTTAACAGCAAATTGCCGCACCTGTATGAAAGCGGACAACAGCAGCAAATATTATCAACTATACGATTATATAGAAGGCGGCCCAATTTTGGAGATGGTGGATGGAATAGTGCCACAAATTCACATCAAGGAGGAGAACCAATTATCCCATTCTGTTTGTCAGTTGTGCGTGGATAAATTGCTGACTTGCCATCGGTTTCAGCAATTATGTATAGAGACAGACAAAGAACTTCGTCGTCTGCTGGGTTTGTCGTTGTCGCCTCTCGAGGCTGATTCGAAACCAGAGCATATTTGGGACCCACTGATGGAAGAGGAAAGTTTAGAGATGAAAATCGAAATAGAGGTTGCTGAGCGTGGTGAGTGTGAAATGGATGTGAATGCTGCTGGTAGTGTGGAAGTGACAGCTCTGCCAAGTGCCAACGAATTGGGAGAGTTAGAAGTAGTAAAGGATGGCATGGATGATAGTGACGATACAGATACAAGGACATTACGAGTATCATTGAAAGCAGCAGGCCACAGCGGCGACTCTAGTAAAGTCTACCCCTGCACAGACTGTGGTAAAGTTTTCGATCGTCTGTCGCGCTTGAAAGTACACGGCTCTGTGCATGCGAAAAAACGGGCATTTACTTGTAATATTTGCAATTACAGTTTCACCACTGAGAAAACATACAGAGCCCACAAGCGAAAACACAAAGAGGCGAATGGAAAATCCTCCCTTCTATGTCCCGACAATGCTAAAGAAGTTATGGATCACCCCGCGCACCAGCTTGTTGAGGAGAAGAAAGTCGCTGAATCAAGCCAAACATTTGAATTAGATAACGACGATTACGAATTTGATGGCAACGAAGAGTGGCTGGACAGCGAAGATGATTTTGTGGTCTTAAAAGACGAAATTCCGGAAAAGAAACGTGACTGTAAACCCAAACATGGCAAAAATGTCGATTTTGTGGACACGGGCATAGGGGAAATTGAAAAACCCAATAGCAGTAATCGTAGAAATGGCAACTACCCCTGTGAAGTGTGTGGCAAAATATTTGATCGTCCCTTCCGCCTGAAACGTCACAGTTCAGTTCATTCGCTGGATAAGCCATACGCCTGTGAAATTTGTAAATGCCGCTTTTCTACAGCGAGCTACTTGAAGACCCACAAATTGTTGCACAAAAACAAAAGCCCTGACGATATGTCTTCGCAGGAGGGTTTCAAGTGTCCCGACTGTCCAAGACGTTTCGAAAAACAGACTTCACTATCGGCCCATCGACAGATACACACGCGCAATTCTTTCATTGCTAGTTACTCGTGCACACTTTGTCAGCGCACGTTTATGTCGGTGAAAACTTTAACGGAGCACGTAACGAATAAGCACCCCGATGCTGAAAAGCATAAATGCGACGAGTGTGACAAAACTTTTGTTTTACATGCTCACCTTGTGGAGCACCAGAATCGCCACAAGGGTAATAAAAATCTGGTTTGTGTCATCTGTGAAAAGGAATTTGGTTTTATGAGCACCCTCAAAGAGCACATGCGAGTGCATAGTGGCGAAAGCCCCTACCTGTGTCCGGAATGTGGCAAAACTTTCAGAAATGGCAGTAATTTACGCCAACACATGGAACGGCATTCCGACCTGAAGAAATATCAATGCCCCGAATGTCCAAGTCGTTTCAACTGCCGATCGTACACTTTGCAAAAACATAAACGATTACATTTGGGCAAAAGGCCACACAAATGCGACGAGTGCAATATGACATTTTCTTTACTCTATCATTTGCGGCGCCACATGCGTACCCATACGGGAGAGAAGCCATACAAGTGTAAGTATTGCGAACGGGCCTATGCCGAAAGTGGAGATTTGAACAAACACTTGAGAAGCCATGTGGGCGAGAACACCTATATGTGTGATAAGTGCCCCAAGGCTTTCAAATATCAATTGCAGTTACGTCAACATTATGCAGAACATTTCAAAATAGATCAGCAAACTAAGGAGAAACCGACGGAATACCTATCACAAACGGCAACGACAGCAGCTCAATAA
- Protein Sequence
- MSSDLTANCRTCMKADNSSKYYQLYDYIEGGPILEMVDGIVPQIHIKEENQLSHSVCQLCVDKLLTCHRFQQLCIETDKELRRLLGLSLSPLEADSKPEHIWDPLMEEESLEMKIEIEVAERGECEMDVNAAGSVEVTALPSANELGELEVVKDGMDDSDDTDTRTLRVSLKAAGHSGDSSKVYPCTDCGKVFDRLSRLKVHGSVHAKKRAFTCNICNYSFTTEKTYRAHKRKHKEANGKSSLLCPDNAKEVMDHPAHQLVEEKKVAESSQTFELDNDDYEFDGNEEWLDSEDDFVVLKDEIPEKKRDCKPKHGKNVDFVDTGIGEIEKPNSSNRRNGNYPCEVCGKIFDRPFRLKRHSSVHSLDKPYACEICKCRFSTASYLKTHKLLHKNKSPDDMSSQEGFKCPDCPRRFEKQTSLSAHRQIHTRNSFIASYSCTLCQRTFMSVKTLTEHVTNKHPDAEKHKCDECDKTFVLHAHLVEHQNRHKGNKNLVCVICEKEFGFMSTLKEHMRVHSGESPYLCPECGKTFRNGSNLRQHMERHSDLKKYQCPECPSRFNCRSYTLQKHKRLHLGKRPHKCDECNMTFSLLYHLRRHMRTHTGEKPYKCKYCERAYAESGDLNKHLRSHVGENTYMCDKCPKAFKYQLQLRQHYAEHFKIDQQTKEKPTEYLSQTATTAAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -