Pdom065303.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- -
- Assembly
- GCA_947397865.1
- Location
- OX377620.1:172746463-172750780[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 2.9 10.3 0.6 1 23 123 146 123 146 0.97 2 13 0.00014 0.025 16.8 1.6 2 23 152 174 151 174 0.97 3 13 1.9e-05 0.0036 19.4 5.3 1 23 183 206 183 206 0.97 4 13 7e-06 0.0013 20.8 3.9 2 23 465 486 465 486 0.97 5 13 1.6e-06 0.0003 22.8 2.8 1 23 492 515 492 515 0.96 6 13 0.00011 0.021 17.0 1.5 1 23 520 543 520 543 0.98 7 13 1.3e-05 0.0024 20.0 1.9 1 23 554 576 554 576 0.97 8 13 0.00027 0.049 15.8 3.1 1 23 581 604 581 604 0.97 9 13 4.1e-05 0.0075 18.4 0.8 1 23 610 632 610 632 0.96 10 13 0.00012 0.023 16.9 1.9 1 23 638 660 638 660 0.98 11 13 6.4e-07 0.00012 24.1 1.6 3 23 668 688 667 688 0.99 12 13 4.5e-07 8.2e-05 24.6 0.3 1 23 694 716 694 716 0.99 13 13 0.00029 0.054 15.7 0.1 1 23 721 744 721 744 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTGGCGGAGAATTATAACAAAAATTACATTTGCCGTGTTTGCATGCAAGCCGAAAAAAAGTTATATCCTATATTTGAGCAAGAGATTCAATCGGGAAATACAATTGCTGGCATTATCTCTGAATTATCCCCAAATGCCCCAGTGTTGACAGATGACATGTTGCCCACGAATATTTGTCGGGCATGTATGGAATCGGCCCGCAATGCCTATAGTTTTAAACGCCAGACAGAAGAGGCGTATCTGAGACTCAAAGCATTGTATGATATAACTTGGATTCCCAAAAAGGAGGAGAAGAAGAAGGGTCCACCCACCTCCGCGACCACAGTAGAAAAGTATACGCAAACGGAAAAGAGTACGGTGTTCCAGTGTGAGTCGTGCCCGCAAAAGTTTTTCGCTGAAAATGAACTGCGACAGCACAGAGCCACCAGTCATGTGTACGATGGGAAAAAATGTCGGGTCTGCGGTGAGAAATTCAATCATTTGGGTCAGTTGAAAGTTCATCTGTCCACGGAACATCCCAACGAAGGTATACGATGCGATTTCAAGTGTCACGTCTGTCTGAGAGAATTTACGCGCAAGGATCATTTGAAGCGACACTTGATAAAAGTCCATAAAATTGAGGATGAAAAGTTGAATATCTCCAAGGTATCTCTGGACGAGCCTGAAATACAAATTGACACTTCAGTCAAGCTCCCAACAGCTCTCAACAATTACAGCAGTCATTGGCCGGACTATCAAGACGAAGAAGAGGATCCGGAAGCTGTAGCTACTCAAAATGAAAATGTCACAGCTACAAATCCTTTCTCGAGTGATGAGGAGGAGAACACCGCGGAACATCACAATTTCACTGATATGGACGAAGAAGATGTAAAGCATTTCGTTGAAACTTTAGCACATCCGGAAATCTCTATTAAAGTTGAAAAACAAGACTACAATGACACTCATTCGCCCGAAAAGTTGCAGAAACTAAATGAAGTTGCCCCAGTGGAGGAGTCGAAAGTCACTCTAGTTCCAACTCTAAAACCAGAGAAAATGGAAGAATATGACAAAATTGAACGGTGCGAGGAGGATGACGTCATGGACGATGATGACAATTTCCACGACGATTCATTAGAGGATGGACATCACAGTGACGAACAGACCAGTGAAGACGACGAAGACAAAAACTACACCGACAATGAATACGACGAAGACGACGAGGAGGAGGATGGGGAAGAGGCAGAGATGCAGGCACATCATGAAGACCTCAAACCAAACCTGTCATCGGCAGAGGAAAAAATGACAGATAAGAAAAAATCACAAAAAGAAAAGCCGGCTTGTTCCTCAACCGCAATAAAAGTAAAAAAGCCTCGTCGCCGCCATGGTTCCTCCAAAACAGAAGACAATCGTTGTAAAGAATGTAACCGCACATTTTCACgctacaatcatttgttacgccatatgttgatccacagcgatgagaagcctcacatttgcaaattctgcggcaaaggcttttcgcgttccgatcacttggccaagcacatacaaagtattcactgtgaaaagaacttcaaatgcgatcagtgcgatagcgcctatggccgcaaggatcatttgctgcgccacatcgagacacGACACAATAAAAATCCGTCCGCTCCAAAGCCCCAGTACGAGTGTGATATGTGCGAGAAAAAGTTCACCACCAAAACCTATTTGATAAGGCACAAACTTTTGCACACGGATCGCTTGTACGCCTGCAAACACTGTTCCGAAACGTTTACGGAGAAGGAACAAATGAAGGAGCATCAGAAGAAAgaacacacccagccacggaacttcctttgcagtatatgcggtgacagttttcagcgtaacgaatatcttaagatacacatgagacggcacactggcgagaagccatacaagtgtcgattctgtgagaaaggttttcctcgaagcactgatttaaaaatgcacGAAAGATACCATATAGGTCTTaagccgaatctttgtaatttatgtggcaaaggtttccatcgtccctacaatctcaccatacacatgcgcacacacaccggtgagaaaccatacaagtgcaatcaatgtccgcaggcattcgcccagagcaatgatttaaaagcccacataaggcgtcacacgggcgaacgatttcgttgcgaaatatgcaatgctgcatttttgcaacgttacggcctgaATGCTCACTTAAGAACGGTGCATGGTATTGTGGTTACTTCGTTTACAGGACGTTTGCGTAAGACCGATCAACCAGGCGATGGGAACGAAGCTAGCGGGCATCACTCGCAAGACCCAGCACTATTGGCGGAAGCGGAGCAGCAGTCATCATTAACACCTATGCAACATAACGCCGACAATTCCACAACGCCACCACTATACTTAGGTCAACATATATTAAATCCCATGACGGTGGTGGGCTTGGCAGCGGCGTCAGCGCCAACAACGTCGATGGATGCCACGCATGCTACGCTTCTTCCACCACCAGCGCCTACTACACAGCTGTAA
- Protein Sequence
- MEVAENYNKNYICRVCMQAEKKLYPIFEQEIQSGNTIAGIISELSPNAPVLTDDMLPTNICRACMESARNAYSFKRQTEEAYLRLKALYDITWIPKKEEKKKGPPTSATTVEKYTQTEKSTVFQCESCPQKFFAENELRQHRATSHVYDGKKCRVCGEKFNHLGQLKVHLSTEHPNEGIRCDFKCHVCLREFTRKDHLKRHLIKVHKIEDEKLNISKVSLDEPEIQIDTSVKLPTALNNYSSHWPDYQDEEEDPEAVATQNENVTATNPFSSDEEENTAEHHNFTDMDEEDVKHFVETLAHPEISIKVEKQDYNDTHSPEKLQKLNEVAPVEESKVTLVPTLKPEKMEEYDKIERCEEDDVMDDDDNFHDDSLEDGHHSDEQTSEDDEDKNYTDNEYDEDDEEEDGEEAEMQAHHEDLKPNLSSAEEKMTDKKKSQKEKPACSSTAIKVKKPRRRHGSSKTEDNRCKECNRTFSRYNHLLRHMLIHSDEKPHICKFCGKGFSRSDHLAKHIQSIHCEKNFKCDQCDSAYGRKDHLLRHIETRHNKNPSAPKPQYECDMCEKKFTTKTYLIRHKLLHTDRLYACKHCSETFTEKEQMKEHQKKEHTQPRNFLCSICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGLKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCEICNAAFLQRYGLNAHLRTVHGIVVTSFTGRLRKTDQPGDGNEASGHHSQDPALLAEAEQQSSLTPMQHNADNSTTPPLYLGQHILNPMTVVGLAAASAPTTSMDATHATLLPPPAPTTQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -