Pdom046447.2
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- lolal
- Assembly
- GCA_947397865.1
- Location
- OX377621.1:40090106-40100941[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-18 5.8e-15 56.5 0.0 2 45 604 648 603 648 0.97 2 2 6.4 2.5e+04 -3.2 0.7 3 11 681 689 681 692 0.82
Sequence Information
- Coding Sequence
- ATGAGCCGAAATCAGTCACCGCCGCCGCTGCCGTCCAAAATTATGTTGACGGCGGCGACAATTTCGGCCAGCTTCGAAAAGAAAAAGTTGCGTCATCATTCTCTGTGGATTTGGCGTTATTTCTTGATTACACAAAAATCGCTCATAATCTTGGTCAGCAGCAGCAGTAGCACCCACCCGTCATCCATCCATCCGTACGACGCATGTTACCACTTTGGGGGCTCTGGTCTAGGTTGGTTGATTacgctcttcacaaccaatccttgtcaacatcccattgtcatattgaaagatgttcaatatgatgatctgaaaacaatggtcgacttcatgtactacggtgaggtgaatgtgtcgcaagagcaattgcctcatatactgaaaacggctgaaatgcttaaaatcaaaggcttagccgaaatgcCCACCGATCCTGCCAATTTAACAAAGTCCGAGAGCAAATCGTCCAGTGACGCCACGGAATTAGTGggcggcggtggcaataatgtggttagtggtagtggcaacagtagcggaggaggcggtggtcttggtagcagtagtggtggcggtagtgtcagtgactcgatttggggcagcaccgaatcacagttccaacaacagcaccagcaacaacagcagcagcagcagcaacaacaacaacagcagcagcagcaacaacaacagcatcaacaccagcaacatcatcaacaactgcaggctcaacagcagcagcaacagcagcaacatcaccatcagcagcagcaacagcaattgcacacacaactacagaatagtcaaacacaaacttcacaacaacagcagcagcaacaacaacaacagcaccatcaacaattaagacgcacaccatcaccattaggcgcgggcgcctcaccggcaaccaGGCGAAAGCGTTTACGAAAATCGTCCAATAATGGTTCGGGTGAACGCACTAATTCCGAAGACCACAATACGTCGTTGGATGCTGCCACAGCGGGTGGTTTAACATTATCACAAATGAGCCAAATGACATTTGGTAGTTCGGCTACGAATAGCGCTCTAGGTGGCTTGGCCGCACATTCATTGCACACGGCTAAACTACTTAAAGAGGCCTCAAATAATGATCTAGAACATAATCCTCAAGATTCAGATAGTTTGGATGACACCCACGGTCATGTCCATATGCAAATTAAACCTGAGGTTGATATCAGCGGTGTACAACAATCCATGCCATTGGATATATCTGGTGCCACGACTCCCTCTGAACACGATGCTCCCAATTCACAATCTGCACATTCAGGTTTACAATGGACGGTTGTTGAATCGAATTATTCACGCTTTTCGCTGCCATCCTGTCCCACCAATttaattggcaataccaacaccaacaatcaaaatccaaataccaacaataacaacagttcaagtagtgaacaacaccagcagcaacagcaacgccagcagcagcagcaacaacaacaacaagacgctgtgaacagccatcaacagcagcaacagcagttgcagcaattgcaacagtatcaacagcaacaccaacagaactcagcatattctccgcaaattatcaccgttagtggttataccaacgcagctgctgttgcggcggcTCAAAACATGTCGCCCCCTTCTCCCACTAATGGGAATATGGTGCAATCGGTATACAGCCAAGGGCCATCGCCATCAGCGTCGCCGGCCGGCAATGCCTCAGGCGGTGTTGGCAGTATGCCGGGCACCAATTCCGCGAACAATGCCAATATCAAACGCAAACGATCGGTCAATCCGCAAGGCGATGAGAATTTTATAAGGGCCCTGGAGGCAGTGCGATCGGGTGGCATTGGTTTTTGCAAGGCAGCGCGCATCCATGGTGTGAACAATCGCACGCTGTGGCTGGAGTATAAGAAGCGCGGCTATCCCGTGTCAAGGCCGAGCATAAAGTCGCGCGTTGTCAAACAAGAACCGAATCTCTCGCCCTCTCCCCCACCGCCCGACACTGCCACAGATGATACCAATGAAAACTATGATCATATGGCAGCCGCGGTGGCAGCTGCCCAAACAGCAGCTCTGAATATGCAAATACCTCCGACACCGGATACACCAACGCCCTCGCTAATGTGTACACCACACCACGCTGGACCAACAGCTGGTCCCACCACCCATCCCACCATGGGTGTAATGAGTTTCTTAGACACCCGCCATATGGATTTTCCAGCTAGTCTGCATTCAATGTCTCGCCAGCGCTATATCGATGCGACAGGGGCTGGAGGTGGCGCCGGGGCGGGTACAATCAATGTCAATCCGGCAGCTGCAATGAATTTACAGAGTATTAATTTCAACTCAATATAG
- Protein Sequence
- MSRNQSPPPLPSKIMLTAATISASFEKKKLRHHSLWIWRYFLITQKSLIILVSSSSSTHPSSIHPYDACYHFGGSGLGWLITLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSESKSSSDATELVGGGGNNVVSGSGNSSGGGGGLGSSSGGGSVSDSIWGSTESQFQQQHQQQQQQQQQQQQQQQQQQQQHQHQQHHQQLQAQQQQQQQQHHHQQQQQQLHTQLQNSQTQTSQQQQQQQQQQHHQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGERTNSEDHNTSLDAATAGGLTLSQMSQMTFGSSATNSALGGLAAHSLHTAKLLKEASNNDLEHNPQDSDSLDDTHGHVHMQIKPEVDISGVQQSMPLDISGATTPSEHDAPNSQSAHSGLQWTVVESNYSRFSLPSCPTNLIGNTNTNNQNPNTNNNNSSSSEQHQQQQQRQQQQQQQQQDAVNSHQQQQQQLQQLQQYQQQHQQNSAYSPQIITVSGYTNAAAVAAAQNMSPPSPTNGNMVQSVYSQGPSPSASPAGNASGGVGSMPGTNSANNANIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARIHGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPPPPDTATDDTNENYDHMAAAVAAAQTAALNMQIPPTPDTPTPSLMCTPHHAGPTAGPTTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDATGAGGGAGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_00817531;
- 80% Identity
- iTF_01231729;