Basic Information

Insect: Polia nebulosa
Gene Symbol: -
Assembly: GCA_951329385.1
Location: OX589607.1:22887761-22897740[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.4 2.4e+02 4.3 1.2 3 23 647 664 645 664 0.68

2 5 1.3e-05 0.0023 20.1 0.5 1 23 670 692 670 692 0.97

3 5 0.027 4.6 9.7 1.1 2 23 699 720 698 720 0.91

4 5 0.0014 0.25 13.7 0.6 3 23 728 748 726 748 0.97

5 5 1.4e-05 0.0023 20.1 2.0 1 23 754 777 754 777 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.4	2.4e+02	4.3	1.2	3	23	647	664	645	664	0.68
2	5	1.3e-05	0.0023	20.1	0.5	1	23	670	692	670	692	0.97
3	5	0.027	4.6	9.7	1.1	2	23	699	720	698	720	0.91
4	5	0.0014	0.25	13.7	0.6	3	23	728	748	726	748	0.97
5	5	1.4e-05	0.0023	20.1	2.0	1	23	754	777	754	777	0.97

Sequence Information

Coding Sequence: ATGGAGGATAAACCTTTCGTTTggACGTCTGTACTCAATAAAAGATTGTTTAAACTTCGTTTCGAGAATGACTGGCTGTTTAAAAGTAAAAAGCAACCGTGGTCGGAGTTTCATAAATTACTTCTGGAAAATGGATTTCCCAGTGAAATGACCGTTGACCATGTCAGAAAGAAATGGTCTTACACTTATGATatgtacAAATTAGCTAAGAAAACAAACAACAAGAGCTGGAAGCATTTCAAGGTGTTTGATAAACATTTTggcaaaaaagaaatattagaCAAATATGAATCTTGGAATGATGAATGGCgcctaaaattaattatttgtgtGACAGAAGCAAAGGAAATAAAGGTTGATCCTCCCACAATGTGGAGAACGGTGGAAAGAGCCATGCGGTGTCAGGACTTACCATTAGACTGCTGTGTTCAAGACATGAAAGGATTGTGGCACCATATCAGAACTACTTTCAATAGAAAACATCGcattaaaataaagaaaggCTCAGAGCAAAGCGAGTGGCCGCTTTATGATGCTTTGTTGAGCTATAATCAGAAATTTGATACTGAAAATTTGGCTTCCTTAGATGCACAGGCTCCTTGCGCCTATAGAGTAAGAGGCTATGCCAGATTTGCCAAGCGCGGCAGAAAGAGAATTGATAAGAATGACGACGAAAATGAAAATGAGTTTCATTGGTCTAAAGATATCACGGAAACGTTCATTCAGATCAGGTTGCAGCACGACTGGTTGTTTAGACAAAAGAAATGGGCGTGGAACGAGATGTTAAAGATCATGATAGAAGAATACGGATTCCCCAAAACGTTAACATCAAGGGAATTGGGAAGGAAATGGGCGGCGACGTTTtcaGAGTATCAGAAAGCGAAGGCAACGAACAATAAATCCTGGGTGTACCACAACTTATTCGAACTGTACTTGGGTGAATCATCCAATCTCAGTCTGAATCCTCTCGTTGATTGGCAAGAAGAATGGGTGTTCAACTTAATCAGAGCTAGAACGGACCTAGAACAAACTTTCAAAACATTCAAGGACCCACTTCACGGATGGCGCGAGGTCGAAAAGTCATTAAGGAGTATGGGAATACCACTGGACCACAGTTTGTTGGATTTGCAAGAAATCTGGGTTCACCTGTTAAAAACTTTTAGGTGGAAAACGAAATTCGCAAACAAAGGCATTCTAAACGAGCAATGGCCTTACTTTGAGGTTATGGGTCGTTACTCCGAAATTCAAGAAAAGAATGCAATCAAAAAGCAAAAGATACAGGACATACCAGAGACAAACGATTGCGCCGACGTAACAAACGCTGACGTAACAAACGCTGACTTAACAAACGACGACGTAACAAACGACGACGTAACAAACGACGATGATTTTGAAGATGATATGAAGTTATACGACCTTAAACAAAGGTTGGAACTCCAAGTGAAACCTAAGTTTGAAGTAGATGATTCTGATAGATGCAGGTCGTGCTCAATACTAGCAGCTTGTGTGGATATATTTGAGCAAAAAGATGACGAGGGTTTTGATGTGGCTTACAAGCTGAAACTTATTGGAGGTGTTGAGGTGGAGAAAACTGACACTTTACCATCACACATGTGTATGGAATGCCTCCAAGAACTAGAAAATGCTTATAAATTCAGACGGAAATGTCAGGACGTCGATAAAATGTTCCGATGTGCACCGCAACAGATCAAAGTTGAAATTATCGATAAAAACGATGTAAATGAAACTCAAGTCGACATCACTAAAGAAGACAATGATAGTCATGATGATGCAGGCGATATAGAAGTCACTTTTGAACAGGAAAGTGAACCAATCGAAGCAAATCAAGAAATCGACGCGAAACCCAAATTAAAGAAAGAGAGAgttataaaaaagaagaaaaaactcCGAAAACTAAGATACGACTACTGGAAGATTTGCGAAGTGTGCGGAAAACATACGAGAAACCTGGTCAGTCACTTAGACACGCACTCTACTGACAAACTTTACACGTGTGACGTGTGTGAcaaaaagttcaaattcaaaagTGGTTTGATTATACATAAAGCGGTCCACAATCCTACGCCGAGGAAGACTTGTGAGGTTTGTGGAAAGGCTTTTCATATATTGGCTCAGTATAGAAGACATTTTGTCTATCATGCTAACGAGAGGAAATATGGATGTGATACATGCGGAAAAAGATTTAACACGTTAGACATATTGAGAGTTCACAATCGAACTCACACGGACGAAAGACCCTTCAGCTGTACAGACTGTGGTAAAACTTTCAGGACGGCCGGCTGCGTCAGTAGACATAAGAGAATTGTACATAGAAATGCTAAAAAAGTTCAATAA
Protein Sequence: MEDKPFVWTSVLNKRLFKLRFENDWLFKSKKQPWSEFHKLLLENGFPSEMTVDHVRKKWSYTYDMYKLAKKTNNKSWKHFKVFDKHFGKKEILDKYESWNDEWRLKLIICVTEAKEIKVDPPTMWRTVERAMRCQDLPLDCCVQDMKGLWHHIRTTFNRKHRIKIKKGSEQSEWPLYDALLSYNQKFDTENLASLDAQAPCAYRVRGYARFAKRGRKRIDKNDDENENEFHWSKDITETFIQIRLQHDWLFRQKKWAWNEMLKIMIEEYGFPKTLTSRELGRKWAATFSEYQKAKATNNKSWVYHNLFELYLGESSNLSLNPLVDWQEEWVFNLIRARTDLEQTFKTFKDPLHGWREVEKSLRSMGIPLDHSLLDLQEIWVHLLKTFRWKTKFANKGILNEQWPYFEVMGRYSEIQEKNAIKKQKIQDIPETNDCADVTNADVTNADLTNDDVTNDDVTNDDDFEDDMKLYDLKQRLELQVKPKFEVDDSDRCRSCSILAACVDIFEQKDDEGFDVAYKLKLIGGVEVEKTDTLPSHMCMECLQELENAYKFRRKCQDVDKMFRCAPQQIKVEIIDKNDVNETQVDITKEDNDSHDDAGDIEVTFEQESEPIEANQEIDAKPKLKKERVIKKKKKLRKLRYDYWKICEVCGKHTRNLVSHLDTHSTDKLYTCDVCDKKFKFKSGLIIHKAVHNPTPRKTCEVCGKAFHILAQYRRHFVYHANERKYGCDTCGKRFNTLDILRVHNRTHTDERPFSCTDCGKTFRTAGCVSRHKRIVHRNAKKVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00810593;
90% Identity: iTF_01030724;
80% Identity: -