Basic Information

Insect: Polia nebulosa
Gene Symbol: -
Assembly: GCA_951329385.1
Location: OX589598.1:11429923-11442020[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.58 1e+02 5.5 1.8 2 23 971 993 970 993 0.92

2 8 0.068 12 8.4 3.3 2 23 1038 1060 1037 1060 0.93

3 8 0.025 4.2 9.8 0.8 3 21 1080 1098 1079 1099 0.95

4 8 0.032 5.5 9.5 6.2 1 20 1107 1126 1107 1129 0.95

5 8 0.00056 0.096 15.0 2.0 1 23 1142 1164 1142 1164 0.98

6 8 2.3e-06 0.0004 22.5 0.5 2 23 1171 1192 1171 1192 0.98

7 8 0.00035 0.06 15.7 0.8 1 23 1198 1220 1198 1220 0.97

8 8 0.00041 0.07 15.4 2.6 1 21 1226 1246 1226 1247 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.58	1e+02	5.5	1.8	2	23	971	993	970	993	0.92
2	8	0.068	12	8.4	3.3	2	23	1038	1060	1037	1060	0.93
3	8	0.025	4.2	9.8	0.8	3	21	1080	1098	1079	1099	0.95
4	8	0.032	5.5	9.5	6.2	1	20	1107	1126	1107	1129	0.95
5	8	0.00056	0.096	15.0	2.0	1	23	1142	1164	1142	1164	0.98
6	8	2.3e-06	0.0004	22.5	0.5	2	23	1171	1192	1171	1192	0.98
7	8	0.00035	0.06	15.7	0.8	1	23	1198	1220	1198	1220	0.97
8	8	0.00041	0.07	15.4	2.6	1	21	1226	1246	1226	1247	0.96

Sequence Information

Coding Sequence: ATGGAGGGTTTTTGCAGAGGTTGTCTCATAAAATATGATGAACCGTTGGAGCTGCTACAATATACTGAGAAAAACAGAAGATTGTTTGTGTACTCAACCGGGCTACAGGTAAAAAGAAATGACACTTTAACATTCCAGCTATGTAAAGACTGCTTCCTCAACATGAAGCAAGCTTGCAAGTTCAAGAAGAATTGTCGCACTTCAGACAAACGGTTTAGAAACTATATAGCTTTAAAAGATGAAGGGGATCCACTGGATTTTTGCACATTTCTCAAGAATAGTGATGATACTGTAACATTCCGTCTTCCGATGACAAGTGGGAATAACACACCAGCAACCCAAAAATGTAGAGATGATGACAATGAATCAACATGCACAAGCATCCATAACTTCATGACGGATATCCTCCAAGGCGAAGAGATGCCGGACACAGAAGCACAGATCATCAAAGAGGTTATAGAAGAAGAGGCGGACGTCCTTGATGACTCACTCGATTCCCATTGGCTGCAGGATGATATGTCTATTGATACGGACTTCAGATTAGATTTTAGTTTCAGTCAATTTTCGACGCCACGCACTGTAAATGATGATCGCTGTTATACACCTAAACAAAAAGAGGATCAATTAACTTTCGACACTATAAACACcgagaaacaaacaaaaatcctTAACGACTTCACAAATGCATTCAAAACAGATGAAAATATTGAAGAACTTAGCATTTTTGTTGGTGGTAATGATAAAACAGAAAGTTTTGAGAATCTAAAAGAATTAGGTCCATTTGGTATAGATGAGACTGATGGTCTGGGAAAATCTGAAATTGATACACTTAAAAGGAAACAAAATCTGAAAGAATTAATAAGTGATCTTGATATAAACGAAATTGATGGCATGGAAACATCAGACAGTCAGAAGGAAAAATCAGATAGTAATGAACCCAAAAGTAATCAAAATCTTAAAGAATTATgtgattttagtttagatagttTTAGTGGTGCAGAGAGAGCAGAAAACGAAATCCTCAAAAATGTTAAAAGTCTAAAAGAATTATgtgattttagtttagatagtaTTGAGGATACGGCTAAATCAGGaagtaatcatttaaaaaataatcacaatGTAAAAGATCTTTGTGATTTGAGTTTAAATGATTTTGATGGCATCGCGAACTCAGGACACTTAAAAAATGATCGAGACGTTAAGGAAATATGTGATTTTGGTATAGATGCAATTGATAAATCAGAAAGTAATTTAGATTTACCATCACTGTCTGAGGTCTTAGAACGAGACAACATAGGCACACCAGACTTTGACATACCAAAAGGTGTAATTGGCTCCATACAGTCCAACGAAGATGTTAGTAATAGCAGTATCAATATTGAAGCTTTGTTAAAAGTTAAACCCGGGAAAGAGAGAATAGATACACCAGATTTTGTCATACCAAAAGGTGTAATTGGCTCCATACAGTCCAACGACGACGTTAGTAATAGCAGTATCAATATAGAAGCTTTGTTAAAAGTTAAACCCGGGAAAGAGAGAATAGATACACCAGATTTTGTCATACCAAAAGGTGTAATTGGCTCCATACAGTCCAACGACGACGTTAGTAATAGCAGTATCAATATAGAAGCTTTGTTAAAAGGTAAACCCGGAAAAGAGAGAATAGATACACCAGATTTTGATATAGCAAAAGGTGTTATTAGTTCTATACAGTCCAACAGCGATGTTAGTAATAGCAGTATCAATATCGAAGCTTTGTTAAAAGTTAAACCCGGGCAAGAGAGAACAGATACACCAGATTTTGTCATACCAAAAGGTGTAATTGGCTCCATACAGTCCAACGACGACGTTAGTAATAGCAGTATCAATATCGAAGCTTTGTTAAAAGTTAAACCCGGGCAAGAGAGAACAGATACACCAGATTTTGTCATACCAAAAGGTGTAATTGGCTCCATAAATTCCAACGACGACGTTAGTAATAGCAGTATCAATATCGAAGCTTTGTTAAAAGATAAACCAGAAAAAGATAGAATAGATACACCCGACTTTGATATACCAAAAAGTGTAATTGACTCCATACAGTCCAACGAAGACGTTAGTAATAGCAGTATCAATATCGAAGCTTTGTTAAAAGGTAAACCAGAAAAAGATAGAATAGATACACCAGACTTTGATATACCAAAAAGTGTAATTGACTCCATACAGTCTAACAATGATTTTAGCAATAGCAGTATTAATATCGAAACTTTGTTAAAAGAAAAACCAGAAAAAGACAGAATAGATACACCAGACTTTGATATACCTAAGGGTGTGTTGATTAGTTCAATACAGTCTAATAACGATATGAGTAATAGCAGCATCAATATCGAAGCTTTGTTAAAAGACAAACCATGTTCGATAGATAAAAAATTAGATGATGCTTTGAAGAACGCTGGTAATAAAGAATTTTCGTTGGAAGAATTACTCATTTCACCACCAGTGTTCCCAGCCGCATCAGCAGCTTCTACACCTACCATAACAAACATACTATTTGGTGAAAACCTCGATACAACTGATACCAATACTAAAATTGGACAGCGCTTTCAAACATATCACAATGTGCAAGGAGATATCGAAATATTTGAAGAATTCTTCCAAAATGACACAAAAGAATTTGACTTAGAAGATATTAAAAGGGAAAATGGAGGATTTAGATCAGGAGATTGGAAAAAACACATTATTGTTAATGATTTTGAAGTTGCAAATAAAGAAAACGATTTAGACAATTTTGTAATGGACATTTCTCTTGACGATAAAGATCAAATTGATACTTATAATCAGGCTACAGCTGTAAAGAAGTCTAAGACGGAACCATTGATACACATTTCGCATGATGATGTTAATGACAAATTTAATATAGAATTTCTATACTGCAAAATGTGTAAAATACGGTACGACACTAGCAGAGCATTCAGCACACATTTCGCgaaaaaacacaacattaaaATCGTAAAACCAAGGaaaccgaacaaaaaaaaagataaacagcttgtaaaaaaaattgagatggAAGCGACTATAAACATTTACGATACACCTGCtaatgaaaaatttgatttagAAAATTCGTACTGTAAATTGTGTAATAAGAAGTACGACTCTAACAAAGCGTTATGCATACACTTTGCGAAAACTCATCGTATTAAAATCGAAAAACCGAAAAgcgttaaaataaacaaaaatcatgAATTACTATGTAATAATTGTGGAACGACAAGCAGGGATCACGCAAATTTTGCTAGACATGTAAAAAAATGTGGGCAAAAGGCAATGATTTTCAAATGCGATCGTTGTCAGTTAGAATTCTCGACGCAAACTCATTTAGAAAAGCACAAGACCTGCCACACGCAgatgaagaaaaagaaagaaaccgGAAAGgAATTTGTATGCACAGTTTGCGgcaaaattttacataaacaaaCTAACTTTGTATTGCATATGAGGCGACATACGAAGGATTACAGTGCTAAGTGCGAGTATTGTGACAGGGGATTCTATAGGCAAGCCGATTTGAAAGCTCACTTGAGgtCGCACACTGGCGAGACCCCATTTTCGTGTAAATTTTGTCCGAAGTTGTTCACTCGTAAAGATGTTTTATTAAGACACGTTCTTATTCATCTTGATGAAAGACTATTCCAATGCGACTATTGTAgtaagaagtttataaaaaaatgtgatttagtAAGACACATAAATAATGAATCATGTAGGAAAGTAATGAAAATTAAGAAAGGATACAAAACAGACAAGGAAGAAATGGACATCGATATACCAGAGGAACGAAAAGAAAATGTAGAAGTTATAAAAGAAGATagaaaacaaaaagttataCAAGAAGTTATAAAAGATGTTACAATCATATATGCAAAAGGCAGTGATGCTGCGATCAAAAGACAGTTACCTTTCTTAGAAACTGAAAGAAGCAATTAG
Protein Sequence: MEGFCRGCLIKYDEPLELLQYTEKNRRLFVYSTGLQVKRNDTLTFQLCKDCFLNMKQACKFKKNCRTSDKRFRNYIALKDEGDPLDFCTFLKNSDDTVTFRLPMTSGNNTPATQKCRDDDNESTCTSIHNFMTDILQGEEMPDTEAQIIKEVIEEEADVLDDSLDSHWLQDDMSIDTDFRLDFSFSQFSTPRTVNDDRCYTPKQKEDQLTFDTINTEKQTKILNDFTNAFKTDENIEELSIFVGGNDKTESFENLKELGPFGIDETDGLGKSEIDTLKRKQNLKELISDLDINEIDGMETSDSQKEKSDSNEPKSNQNLKELCDFSLDSFSGAERAENEILKNVKSLKELCDFSLDSIEDTAKSGSNHLKNNHNVKDLCDLSLNDFDGIANSGHLKNDRDVKEICDFGIDAIDKSESNLDLPSLSEVLERDNIGTPDFDIPKGVIGSIQSNEDVSNSSINIEALLKVKPGKERIDTPDFVIPKGVIGSIQSNDDVSNSSINIEALLKVKPGKERIDTPDFVIPKGVIGSIQSNDDVSNSSINIEALLKGKPGKERIDTPDFDIAKGVISSIQSNSDVSNSSINIEALLKVKPGQERTDTPDFVIPKGVIGSIQSNDDVSNSSINIEALLKVKPGQERTDTPDFVIPKGVIGSINSNDDVSNSSINIEALLKDKPEKDRIDTPDFDIPKSVIDSIQSNEDVSNSSINIEALLKGKPEKDRIDTPDFDIPKSVIDSIQSNNDFSNSSINIETLLKEKPEKDRIDTPDFDIPKGVLISSIQSNNDMSNSSINIEALLKDKPCSIDKKLDDALKNAGNKEFSLEELLISPPVFPAASAASTPTITNILFGENLDTTDTNTKIGQRFQTYHNVQGDIEIFEEFFQNDTKEFDLEDIKRENGGFRSGDWKKHIIVNDFEVANKENDLDNFVMDISLDDKDQIDTYNQATAVKKSKTEPLIHISHDDVNDKFNIEFLYCKMCKIRYDTSRAFSTHFAKKHNIKIVKPRKPNKKKDKQLVKKIEMEATINIYDTPANEKFDLENSYCKLCNKKYDSNKALCIHFAKTHRIKIEKPKSVKINKNHELLCNNCGTTSRDHANFARHVKKCGQKAMIFKCDRCQLEFSTQTHLEKHKTCHTQMKKKKETGKEFVCTVCGKILHKQTNFVLHMRRHTKDYSAKCEYCDRGFYRQADLKAHLRSHTGETPFSCKFCPKLFTRKDVLLRHVLIHLDERLFQCDYCSKKFIKKCDLVRHINNESCRKVMKIKKGYKTDKEEMDIDIPEERKENVEVIKEDRKQKVIQEVIKDVTIIYAKGSDAAIKRQLPFLETERSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -