Pneb058190.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polia nebulosa
Gene Symbol
Gzf1
Assembly
GCA_951329385.1
Location
OX589615.1:4378059-4391972[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 4.4e-05 0.0075 18.5 2.4 1 23 195 217 195 217 0.98
2 8 0.0034 0.59 12.5 4.3 2 23 222 244 221 244 0.93
3 8 0.0004 0.068 15.5 1.1 1 23 250 272 250 272 0.98
4 8 1.6e-06 0.00028 23.0 1.3 1 23 278 300 278 300 0.98
5 8 0.011 1.9 10.9 5.4 1 23 306 329 306 329 0.94
6 8 8.4 1.4e+03 1.9 0.2 1 12 336 347 336 350 0.83
7 8 0.021 3.5 10.1 2.5 2 23 350 372 349 372 0.93
8 8 0.001 0.18 14.2 0.9 1 23 379 402 379 402 0.96

Sequence Information

Coding Sequence
ATGTTGGCGTTACTTCTACTAAACAACATGAGTGCAAAACACAGGGCAGCGAAGCGCAAACTGGCTGCGAAAGCGGATAAAGCTGAGCCGAAGGTGCCAGAACAGGTTTACTGCAGGACTTGCTTGAATACGGAGGATTTAGTGTCgatattttataacaaagaaAGCGAAGAAAAAAGAACGGAGGATTTGAGGCTTGTGACTGGTTTAGAGATAAAAATGGACGATGGTCTATCTCAGAAGATTTGCACACAATGTATAGAGACTATGAACATGTCACTACAGTTCAGGAGAACTAGTCGGAAAGCTGAGAAGTCCCTGCTTAACATGTTATCAGGTAAACCCAAAAAGCGTCACTCAACGCGACTCCAAAAGTCTTTATCCAAGCCAAAATTAAAGGAAGCAAAAGTGGAGAAGGTGGAACTGAACGACTACAGCTACGAGATCTTCAGCGAGGAGTTCCAgaacgatgatgatgaggacTATGAGCTGATGGTGAGGACGAAGGCTAAGAGAGATCTGAGGCCCAGGCAGAAAGCGCCTCCCGCAAAGAAACGCATGACCATGCCAAACCTGGCGTCGTATAAATGTGGAACGTGCAGCAAGGAGTTTCGGATGAAGGCCACTTATAAAGCACACATGAGGTTCCACACAAATTACTGTGTTTGCGAGGCATGCGGAAAGAGATGCCGCAACAACAATCAGCTACAGGAACACAAGAGAGCCCGACACGGCTTGTACAAGATTCACAAGTGTGCATACTGCGAGTATAGTTCTGCTACTAAAGAGGCCTTAACGATCCACGAACGCCGTCACACAGGAGAGAGACCGTACGTCTGTGATCACTGTGGCGCCACCTTCCATCGACGGTCGAACCTAGTGCAGCATATAGCCATACATTTGCCTGAGAAGAACTTCCAGTGCCATATGTGCCCCAAACGGCTCAAGTCGCGCAAGTTCCTGCAGATACACAAGCACAACGCGCACACCGGCAAGCGTTACGGGTACCTCTGTGGCATTTGCGAGCATCGGTTCGAGAAGCCGAACAAATGCGACATGTGCCCCAAACGGCTCAAGTCGCGCAAGTTCCTGCAGATACACAAGCACAACGCGCACACCGGCAAGCGTTACGGGTACCTCTGTGGTATTTGCGAGCATCGGTTCGAGAAGCCGAACAAAGTCCGCGCTCATATGCGGCGCGTGCATGGCGTGGCGGATGACCAGCAAGGGCCGATTGTTAGGGTGCAGCTTTAG
Protein Sequence
MLALLLLNNMSAKHRAAKRKLAAKADKAEPKVPEQVYCRTCLNTEDLVSIFYNKESEEKRTEDLRLVTGLEIKMDDGLSQKICTQCIETMNMSLQFRRTSRKAEKSLLNMLSGKPKKRHSTRLQKSLSKPKLKEAKVEKVELNDYSYEIFSEEFQNDDDEDYELMVRTKAKRDLRPRQKAPPAKKRMTMPNLASYKCGTCSKEFRMKATYKAHMRFHTNYCVCEACGKRCRNNNQLQEHKRARHGLYKIHKCAYCEYSSATKEALTIHERRHTGERPYVCDHCGATFHRRSNLVQHIAIHLPEKNFQCHMCPKRLKSRKFLQIHKHNAHTGKRYGYLCGICEHRFEKPNKCDMCPKRLKSRKFLQIHKHNAHTGKRYGYLCGICEHRFEKPNKVRAHMRRVHGVADDQQGPIVRVQL