Basic Information

Insect: Polia nebulosa
Gene Symbol: -
Assembly: GCA_951329385.1
Location: OX589615.1:9879570-9889402[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.28 47 6.5 1.1 1 23 261 283 261 283 0.94

2 9 0.0026 0.44 12.9 2.1 2 23 353 374 352 374 0.95

3 9 0.034 5.7 9.4 2.0 1 23 378 400 378 400 0.97

4 9 0.0029 0.49 12.8 1.1 1 20 408 427 408 431 0.78

5 9 0.027 4.7 9.7 2.2 1 23 437 460 437 460 0.96

6 9 8.5e-05 0.015 17.6 0.6 1 23 466 489 466 489 0.95

7 9 3.2e-05 0.0055 18.9 1.4 1 23 495 517 495 517 0.97

8 9 6.4e-06 0.0011 21.1 0.9 1 23 523 545 523 545 0.98

9 9 0.00025 0.043 16.1 1.7 1 23 551 574 551 574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.28	47	6.5	1.1	1	23	261	283	261	283	0.94
2	9	0.0026	0.44	12.9	2.1	2	23	353	374	352	374	0.95
3	9	0.034	5.7	9.4	2.0	1	23	378	400	378	400	0.97
4	9	0.0029	0.49	12.8	1.1	1	20	408	427	408	431	0.78
5	9	0.027	4.7	9.7	2.2	1	23	437	460	437	460	0.96
6	9	8.5e-05	0.015	17.6	0.6	1	23	466	489	466	489	0.95
7	9	3.2e-05	0.0055	18.9	1.4	1	23	495	517	495	517	0.97
8	9	6.4e-06	0.0011	21.1	0.9	1	23	523	545	523	545	0.98
9	9	0.00025	0.043	16.1	1.7	1	23	551	574	551	574	0.98

Sequence Information

Coding Sequence: ATGAGCGTGAATAACCGCAAGGGTCCGATCGTGGACCCTGGCATGTGCAGGTGCTGTGGTGCACTCAAGAAGTGTCGTCTATTGAACGTAGAATACGAGTGGTCTGGTCAAAGAGAAGTTTATGCCGATATGTTTGTTGATTGTTTTGGGCTTGTGCTATCTCACTTGGAGGGCGAGGAGTCGGAGCGCGTCATCTGCGCGACATGCGTGGTGCGTCTGAGGGACGCGTGCGCCTTTAGACAGCAAGTGCTGCTGTGTGAGGAGAAGCTGCTTACTGCTATGGTCCATATTCATGACACTATCGAGAACATTAAAATGGAGGTAGAAGTGAAAGAAGAGGTTATCAGCACACCGTTACAAGCAGCCAATGACTCTGACAATGATGTTGATGATCATGTCACTGACCCCATTGATGATAGTATGCAACATATTGATGAAGAGACAACTAATGAACTgtctaacgaagtcaaatacctgGGAGACAACctagacaTGTCAATACAAGTGAAGCTAGAAGAGTTACAAGATAGCTCAGTTGAGCTGTCGTTGCCGCAGCGCCGTGAGGGCGCCACCGTCGACCCCGCCCAGGTCGACATGCTGGACAAACTGAACAGCATGAAGCAGAAACTGGATCAAATGCAACATATTGATGATACCCGAGCCGAATCCCCTCTCTATAGACGCCCAGACACAACAGACAAAGACCTTCACATAATAAGAAACGCGGTCAAAATCGTCGAAAATTCTTATGTCTGTCCGTTCACCACCGTTTTCAGCGATTACCACTGTATATACTGTCGAGAAATGTTTTTAGACCCAAACGAACTTAGAGAACATACCATGACACACGACCCGAAGATGTATAAAGATGTTGTAGAAAGAAATACAAGAAAGTTAATACAAGTGGATATAGAGAGAATTGACTGTAGGTTATGTGAGGAAAAAATCGATACTGTTGAGAGTTTTAAAGATCACTTCACAACAGTACATGGTCAAAAGCTGTACAAAGATGTACATAATGAATTTATGCCCTTCAAACTTAAAATTGGGACGCTCACCTGTGTTGAATGCGGCAAACATGTAAGCTTTTTTCATGCCTTAAAAAAACATATGGCCGAACATTTCGGTACATTCATTTGTGACGTTTGCGGTGTACATTATTTTGAAGAAAGACATTTAATAATCCATAAAAAATCTCATAATAAGAAAAAGGATCCAATCTTTCCTTGTAACGAATGTGATAAGACTTTTCGCTCGAAGAATAGTAGGAGCTTCCATATCGCGCGGATACATAAGAACGAACCGGCTTATCCCTGTAATAAATGCGATGAAATTTTCATTTCGTATCATATGAGATACAAACATAAAATGAGTGTCCACGGCGAAAAACGTATGTTTCCTTGTGAGGGATGCGACAGAGTGTTTGAAAGTCGCAAAACTCTTCGAGAACACAACCAGAGGACACACTTACAGTTATTCCGACACGAATGTACTCTTTGCGACAAAAAATTTTACCTACCCTCCGCTTTAAGAGATCATATGACGTCACATACTGGAGAACGCAACTTCCGATGTGAGTTTTGTGGGAAAAACTACCCTAGGTCTAAAGCGTTAAAGGTCCATTTGCAATCTCATAGTGCTGAGAAAAGGTATAAATGTAGTTTGTGTCCGTCGGCCTATACGCAAGTAACTAATTATAAAAATCATATGAAGACTAAACATCCTGCGCCGGATCTCGTGGTTGAGGGGTATCGTTAG
Protein Sequence: MSVNNRKGPIVDPGMCRCCGALKKCRLLNVEYEWSGQREVYADMFVDCFGLVLSHLEGEESERVICATCVVRLRDACAFRQQVLLCEEKLLTAMVHIHDTIENIKMEVEVKEEVISTPLQAANDSDNDVDDHVTDPIDDSMQHIDEETTNELSNEVKYLGDNLDMSIQVKLEELQDSSVELSLPQRREGATVDPAQVDMLDKLNSMKQKLDQMQHIDDTRAESPLYRRPDTTDKDLHIIRNAVKIVENSYVCPFTTVFSDYHCIYCREMFLDPNELREHTMTHDPKMYKDVVERNTRKLIQVDIERIDCRLCEEKIDTVESFKDHFTTVHGQKLYKDVHNEFMPFKLKIGTLTCVECGKHVSFFHALKKHMAEHFGTFICDVCGVHYFEERHLIIHKKSHNKKKDPIFPCNECDKTFRSKNSRSFHIARIHKNEPAYPCNKCDEIFISYHMRYKHKMSVHGEKRMFPCEGCDRVFESRKTLREHNQRTHLQLFRHECTLCDKKFYLPSALRDHMTSHTGERNFRCEFCGKNYPRSKALKVHLQSHSAEKRYKCSLCPSAYTQVTNYKNHMKTKHPAPDLVVEGYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00039266;
90% Identity: -
80% Identity: -