Pneb048024.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- ZNF521
- Assembly
- GCA_951329385.1
- Location
- OX589608.1:26352060-26376706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00027 0.046 16.0 0.4 1 23 310 333 310 333 0.96 2 10 0.21 36 6.9 3.6 1 19 343 361 343 365 0.92 3 10 2.7e-05 0.0046 19.2 3.7 2 23 371 392 370 392 0.97 4 10 0.0064 1.1 11.7 3.0 1 23 396 419 396 419 0.96 5 10 0.0013 0.22 13.9 0.4 2 23 469 490 468 490 0.95 6 10 0.02 3.5 10.1 0.7 2 23 510 532 509 532 0.96 7 10 1.6e-06 0.00028 23.0 5.8 1 23 538 560 538 560 0.99 8 10 2.7e-05 0.0046 19.2 2.4 1 23 565 587 565 587 0.98 9 10 0.00045 0.077 15.3 3.2 2 21 594 613 593 616 0.94 10 10 0.029 4.9 9.6 2.7 3 19 656 672 654 677 0.89
Sequence Information
- Coding Sequence
- ATGGAGAAGCTGCCAATGTGTAGAATATGTTTAGCGGAGAATGTTCGCATGTATGTTGTTGTAAACAAGAACTTGCATGAACTGTATGAGAGGCTGACTGATAATCCATTtataaccaaagacaatagacCGATGCTTGCTTGTTTCTTCTGCTGCACTAAATTAAAGCAATGCTGCCGATTCCAGAGAAAATGTCTGGAAAGTGAAGAGCTTTTTGCTCAAATGATGAATGAGGATTATGAGCTAAAACcgttaataaaacaaaaccacTTAGAATGTTTTAATGGGTTAATTCAATCACGTATGGTGCATGTGAGCGTAGTTGATCAACATCAAACAGAAAGTGATGATATCCAGGAAGAGTTACCAGCTGTTTGTGAGAGACCAGAAGATATCATTGAGCCAAAGGTGGAACATCAAAGTGATGAACTTGAACTGGAAAATCTAAACAACATCTATTCAGAAATAGAAGATATGCCAGCACAACAGTCTGACTCAGATTTAGAAGATGATCTGCCTTTAATGGAGATCAAAACGGAGGTGGACGAAGAGCAAGAAGTGTGGAGGAAAGGAAGAGCCAGTGACACGCAACaACTTGAACTGGAAAATCTAAACAACATCTATTCAGAAATAGAAGATATGCCAGCACAACACTCTGACTCAGATTTAGAAGATGATCTGCCTTTAATGGAGATTAAAACGGAGGTTGACGAAGAGCAAGAACAGTGCAGTGACATGCAACaGCTCGAACTGGAAAATCTAAACAACATCTATTCAGACATAGAAGATATGCCAGCACAACAGTTTGACTCAGATTTAGAAGATGATCTGCCTTTAATGGAGATTAAAACGGAGGTTGACGAAGAGCAAGAACAGTGCAATGACACGCAACagaACTACTTATCACACAATCCACGCACCAAGAAATACCAGTGCAACATATGCAAACAGATATTTGACCAACTATCTGCCTTCAAACTGCACGTGATAAGCAGTCACCGGCTCTCCGTCTCCAGAAACCTTAAGTACATGTGTTCAGAATGCGGGAAAAACTTGAAAACCCACGAAAAGTTTGTGCAACACTGCCTTGGACATGGCGACCCCGAACTAGAATGTAACAAGTGTCACAAAGTGTTCGCGTCAAAATTCACCTTACGCAATCACCGTAAGATACATTCTCGGCAATTCTCCTGCAGCTACTGTTCAAGGACTTTTGGAACGGTGCAAGAGTTACATGCGCATACATCGAAATTCCATGTTCCTTCGGAGAAACAGAACATTATTATGCAAGAGGAAGACGAACATAATATACAAAGTCATGACTCGGTAATAGCGAAAGTGGTGTCGAACAATATATTTCAAACTAACTCACAGACGAACAAGAAACAGAGGCAGTCTAACAAGAGTTGCGAAGTGTGTCTCAAAAAGTTCGACAGGATCGGCGACCTCAAGAGGCATCTCATCGAGCACGTGAtcaggagcacgcttgccaagatcCCAGTGAACAAGTACGGAATCCTCAACATACGATGCGAGATCTGTCAGAAAAAGGtatttacaaaaattgataAATACAAAGCCCATTTGAGGGAGCACGCGGAGCTCACCATCTACAAATGTACCCTTTGCGACAAGTCCTTTAGCGACTCCAGCAACTTTTGTAAGCACAAAAAAGTCCATGGCGCCACGTACTTCCAATGTGACATGTGCCGACGGAAGTTCAGCTCCAAGAAGATGTTAATTCAGCATATGGAGTACCACAACAAAACACGACCGATTCAGTGTCCATATTGCGACAAAGTGTTCCATTTCGAGTCGATGCTGAATAAGCACTTGAACTGCTCCCATACCAAGGaaacgagaaaaaaatacagttgcaGGTTCTGCCGCCAATTCTCCAGCAGTTTGAAGGAGAAGTGGGACCACGAGTGGATAGTTCATAATGTCAGGAAGGTGATTCTAGACTGCCTAATTTGTGGGTCCAGGTTCAGAAAGTATTCAGAGTTAAAGAGGCATTGCACAAAAGAGCACGATACCAGCATACCTCCAGCTAAAAGATCGAAGAAGAGCAAATTGAAAATGGTTGATGAAGATCAGAACATGGCTGGGCTATCAATAATAGTAATAGATTAA
- Protein Sequence
- MEKLPMCRICLAENVRMYVVVNKNLHELYERLTDNPFITKDNRPMLACFFCCTKLKQCCRFQRKCLESEELFAQMMNEDYELKPLIKQNHLECFNGLIQSRMVHVSVVDQHQTESDDIQEELPAVCERPEDIIEPKVEHQSDELELENLNNIYSEIEDMPAQQSDSDLEDDLPLMEIKTEVDEEQEVWRKGRASDTQQLELENLNNIYSEIEDMPAQHSDSDLEDDLPLMEIKTEVDEEQEQCSDMQQLELENLNNIYSDIEDMPAQQFDSDLEDDLPLMEIKTEVDEEQEQCNDTQQNYLSHNPRTKKYQCNICKQIFDQLSAFKLHVISSHRLSVSRNLKYMCSECGKNLKTHEKFVQHCLGHGDPELECNKCHKVFASKFTLRNHRKIHSRQFSCSYCSRTFGTVQELHAHTSKFHVPSEKQNIIMQEEDEHNIQSHDSVIAKVVSNNIFQTNSQTNKKQRQSNKSCEVCLKKFDRIGDLKRHLIEHVIRSTLAKIPVNKYGILNIRCEICQKKVFTKIDKYKAHLREHAELTIYKCTLCDKSFSDSSNFCKHKKVHGATYFQCDMCRRKFSSKKMLIQHMEYHNKTRPIQCPYCDKVFHFESMLNKHLNCSHTKETRKKYSCRFCRQFSSSLKEKWDHEWIVHNVRKVILDCLICGSRFRKYSELKRHCTKEHDTSIPPAKRSKKSKLKMVDEDQNMAGLSIIVID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -