Pneb046782.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- -
- Assembly
- GCA_951329385.1
- Location
- OX589608.1:11273820-11286535[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.031 5.4 9.5 1.2 1 23 290 313 290 313 0.98 2 10 0.0066 1.1 11.6 2.1 3 23 322 342 320 342 0.97 3 10 0.00053 0.091 15.1 0.1 2 23 378 400 377 400 0.96 4 10 0.00043 0.074 15.4 0.6 5 23 405 424 404 424 0.95 5 10 1.4e-05 0.0025 20.0 1.1 1 23 430 452 430 452 0.95 6 10 2.9 5e+02 3.3 0.7 2 22 462 482 462 486 0.91 7 10 7.2e-05 0.012 17.8 3.5 1 23 490 513 490 513 0.93 8 10 0.00021 0.036 16.3 1.4 1 23 519 542 519 542 0.96 9 10 0.00031 0.054 15.8 2.7 1 23 550 572 550 572 0.97 10 10 0.00016 0.027 16.7 0.2 1 23 578 601 578 601 0.96
Sequence Information
- Coding Sequence
- atggagCAAACTTTAAATATATGCCTGGCATGTCTAAGCAAGGATCGTTACCTAGTTCCTTTACATAAACTAAAAATGTTACTACAGGAAATACATTTTCTAGAGTTGAAAGTGTCTTATGGTGGAGTATGTTGGGAATGCTGCAGTATCCTGGCCAAGTTCAATAGATTTAAGAATAAAGTTAAAACAGCCCAGGATACTTTATCACAAAATACAGAGCACTACAATATAAAATCACTAACAACATTGACAtcaaaaatcaatattttctaCGACTATCAATACACCCATAGCTTTGATCCTCTCACCAACTGCAATACAAAATTGAAGGCTGAATCTCAGATCAAACAAGAACTCATAGACCAAAATGATGATAACATAGACAATACTTCAGATTTTAATGAAGAAACAGACCATGTATATGATGTTTTAATTGAATCGAAACATAGTGATCATGTATTGAAAAAACaagaaactataaaaaaaattgataataatAGTGAAGCTGAAAATTCCAACTCAGAAGAAACAAAATTACATAATGAAGATAAATTATGTGACAGTCCTGAAATAACAGAAAATTTATACATAGACATGCTTCATagtaaacacaataaaaaattattaaagaaacaaaaatatcatCAATATGTAAATAGACTTCAAATTAAAACTGACCAAAGCAATGcagaaactttaaaaaaaaaatctagtaaccacagattaaaaacaaaaaaacctaaaagagATTTAGAAGGAGGTGCAGAAGAGTTTGAAGAGAAGTTTATAAAAGTAGTATTGAGTCAAGAAGAGATGTTAAGAGTAAGGGAAGAGAAGAGAAATCAGTACAATTTCAAGAAGATtccttataaatgtgatagtTGTGTGCTTGGGTTCATGAGGAAGGACACATATAGTTTACATATACAGAAGAAACATGATGAGAGCATCGGCGACCAAATCTGCGATGTATGCTCCATCCGTTTCCGCCACAAGCTAGCTCTCATGAATCACAAAAACAAGCACTATGTGGTGTACCGATGTAGACTATGCAAATATGAGATCCATGAGTTTGCGTCCGCTGTGAATCATTGCAAGACCAAGCATGTTGATGATAAGCCCGATAGGATACATTGTTCACAGTGTAGTGTTGTGGTCAAAACCCCAGAGGATTTAGAAGCACACATGCAGACGGATCATAGCCTTTACTGTGAATGTGGCATCAAATTCAAAGACAAAAATAATCTGAGACAACACATAAGTCGAGCCCACTCCGGCCTACGCGACTTCATCTGTGATATTTGCAAAAAGacttttaaaactaaaaccCGTTTAGAAACTCACATGGTGGGGCACAGCGGTAACATTGCCAAGAAGCTAGCGTATTGCCAACAGTGCAATGTTCAGTACAAGAATATACAAGTCTATAGGAGTCATCTGAAGACGAGTGCTAATCATTCAGAAGgACACCCATGTTCAGAGTGCAACAAGAAATTCAGATCCAAGGGGTACTTGAGGCAACACGTCAACTTCTATCATTTACGGAAGTCGCAGTACAAATGTGAAGTGTGCAATAAGATTTTCATATCAAATTGGCGTTTGCGCAATCACAAGCAGCAGTACCACGGCCTGAGCAGACCTAGGAAACATTCTTGTAACATATGCGCCAAAAAATTCTTTACTTTGGCAACTCTCCGCAGTCATCAGCTCACACATTCGGACCAGCGATCTTTCATGTGTGAggattgtggcgacactttcaAGCAAAGTGCGGCGTTGTACACACATACGAGACTTGTGCACAAAGGTGGAGGATCTAAAAAGAAGCGTGACTGTTGA
- Protein Sequence
- MEQTLNICLACLSKDRYLVPLHKLKMLLQEIHFLELKVSYGGVCWECCSILAKFNRFKNKVKTAQDTLSQNTEHYNIKSLTTLTSKINIFYDYQYTHSFDPLTNCNTKLKAESQIKQELIDQNDDNIDNTSDFNEETDHVYDVLIESKHSDHVLKKQETIKKIDNNSEAENSNSEETKLHNEDKLCDSPEITENLYIDMLHSKHNKKLLKKQKYHQYVNRLQIKTDQSNAETLKKKSSNHRLKTKKPKRDLEGGAEEFEEKFIKVVLSQEEMLRVREEKRNQYNFKKIPYKCDSCVLGFMRKDTYSLHIQKKHDESIGDQICDVCSIRFRHKLALMNHKNKHYVVYRCRLCKYEIHEFASAVNHCKTKHVDDKPDRIHCSQCSVVVKTPEDLEAHMQTDHSLYCECGIKFKDKNNLRQHISRAHSGLRDFICDICKKTFKTKTRLETHMVGHSGNIAKKLAYCQQCNVQYKNIQVYRSHLKTSANHSEGHPCSECNKKFRSKGYLRQHVNFYHLRKSQYKCEVCNKIFISNWRLRNHKQQYHGLSRPRKHSCNICAKKFFTLATLRSHQLTHSDQRSFMCEDCGDTFKQSAALYTHTRLVHKGGGSKKKRDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -