Basic Information

Insect: Polia nebulosa
Gene Symbol: -
Assembly: GCA_951329385.1
Location: OX589594.1:7388808-7399932[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.75 1.3e+02 5.2 0.1 3 23 113 133 111 133 0.96

2 19 0.28 47 6.5 0.4 2 23 137 159 136 159 0.95

3 19 2.5 4.3e+02 3.5 3.2 2 23 210 232 209 233 0.91

4 19 0.027 4.7 9.7 0.4 2 23 387 409 386 409 0.94

5 19 0.006 1 11.8 0.1 1 20 417 436 417 438 0.94

6 19 0.0093 1.6 11.2 0.6 2 23 448 469 447 469 0.94

7 19 9.9 1.7e+03 1.6 1.5 1 23 485 508 485 508 0.84

8 19 0.011 1.9 10.9 2.7 1 23 517 540 517 540 0.94

9 19 2.6 4.5e+02 3.5 0.1 2 23 617 639 616 639 0.83

10 19 4.8 8.2e+02 2.6 1.9 1 23 644 667 644 667 0.93

11 19 0.00016 0.027 16.7 1.8 1 23 673 695 673 695 0.95

12 19 0.00038 0.065 15.5 1.9 1 23 702 724 702 724 0.98

13 19 0.0001 0.018 17.3 2.3 1 23 729 751 729 751 0.96

14 19 0.00029 0.05 15.9 2.8 1 23 757 779 757 779 0.98

15 19 1.9e-06 0.00033 22.8 2.1 1 23 785 807 785 807 0.98

16 19 0.00068 0.12 14.7 2.6 2 23 814 835 814 835 0.98

17 19 0.001 0.18 14.2 0.7 2 23 843 865 842 865 0.97

18 19 6.5e-05 0.011 18.0 1.6 1 23 870 892 870 892 0.97

19 19 0.0026 0.44 12.9 1.6 2 23 899 921 898 921 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.75	1.3e+02	5.2	0.1	3	23	113	133	111	133	0.96
2	19	0.28	47	6.5	0.4	2	23	137	159	136	159	0.95
3	19	2.5	4.3e+02	3.5	3.2	2	23	210	232	209	233	0.91
4	19	0.027	4.7	9.7	0.4	2	23	387	409	386	409	0.94
5	19	0.006	1	11.8	0.1	1	20	417	436	417	438	0.94
6	19	0.0093	1.6	11.2	0.6	2	23	448	469	447	469	0.94
7	19	9.9	1.7e+03	1.6	1.5	1	23	485	508	485	508	0.84
8	19	0.011	1.9	10.9	2.7	1	23	517	540	517	540	0.94
9	19	2.6	4.5e+02	3.5	0.1	2	23	617	639	616	639	0.83
10	19	4.8	8.2e+02	2.6	1.9	1	23	644	667	644	667	0.93
11	19	0.00016	0.027	16.7	1.8	1	23	673	695	673	695	0.95
12	19	0.00038	0.065	15.5	1.9	1	23	702	724	702	724	0.98
13	19	0.0001	0.018	17.3	2.3	1	23	729	751	729	751	0.96
14	19	0.00029	0.05	15.9	2.8	1	23	757	779	757	779	0.98
15	19	1.9e-06	0.00033	22.8	2.1	1	23	785	807	785	807	0.98
16	19	0.00068	0.12	14.7	2.6	2	23	814	835	814	835	0.98
17	19	0.001	0.18	14.2	0.7	2	23	843	865	842	865	0.97
18	19	6.5e-05	0.011	18.0	1.6	1	23	870	892	870	892	0.97
19	19	0.0026	0.44	12.9	1.6	2	23	899	921	898	921	0.96

Sequence Information

Coding Sequence: ATGTCTTCAGATGAGTCTGATGATGAACCACTTTCCGTTATAGCAAATAAGAAATTAGAACCAGAACAACATGAGGCTTTCACATCCGATTCTTCAGAGTCTccaattagaaagaaaaagaagttaCCACCACCTAAAAAGTTATCAGTCACGATAAAGCTTCAACGTAAGAAGATTGCTGAGCAACCGCCGGTAATTGAGCGGCCGGCAGATGTGTGGCTGTACCTAAAAGATCTAAACCCTTCGGGACCCTACAGTTGTTTACTCTGCACTGACTGGTTCATAAATAGATCGAAAATGATTATACATTACGTCCTTAATCATAAAAAAGACTTTTGTGGTGTTTGTAGataCTTCGTACCTGATAGAGAGGCGTGGGCGAAACATTTGAGGTTTCATAATCCCTGGCCGTGCTCACAATGTGTGGAGAATCTTGAAACTGAAGTAGAGCTCCGGCATCATCTCAAGTCTCGTCACAATCTTGTGCATTGTAGACTCTGTCACTTCCGTTTACATGATGGTGATCTGTACCACACACACTTATTCCAAAAACACAATGTCTCCAATGTATCAAATAAAGATGAGGAAGATCTTTGGGAGTTAGAATATGATGGCACCTCCAACTTCCTCTGTTTACTTTGTAATAAATCTACCAACTCTATTAGAACGTTCTTCAATCATTACATGGGGTATCACCACTTCACCCTAAAATGTTTTGCTGCTCTGTTGTCAGGCAGAGACGTACCATTCTCCGTGTATGGTGCTGATCTCAGAGCTGAGTTTGTTGAAGAACAACTAAAACACCATGAAAGATTTGGCTATGTGGATTCTGAGTTACAGCCTAGTGACTGTGTTATAGTGGACGACCCAAATCAAACTATACTTAAAGTCCTCATACCAGAGATTAAACAAGAAGGAGACACCGCTGATGAAGCCAAGAATGATGATGGAACTGCAAAGAACAATGATGACGACGATGTTTACAAAAGCTACAATGGTATTGATGACTTTGATGTTACTCTAATGGAGCTCATAGTTGTACAGAAGTGTTATCATGATTACATTACTGATATATTATCAGATATAGATGCTAATTCATTTTTTGAGTACTCAGATGTTGACTATGAGAAGCTCACCACAGAAGTAGCAATGGATATAGTCTGTATGCTGTGCAGTATCCGATACAGTACTTTGTCAAGTTTTGCCAGTCACATGTTCAAAATGCATTCCATAAAGTCTTTACCGATATTCTCATGTAGAGTGTGTGCAACTACTTTTGAAACCCAAAATGAGTTAGAAAATCATATATCAAATGAGTTGGGAGAATTTGAGGATCTGTGGATTTGTCAGTTTTGTGACAAAGAGTTTGATGACAGGGAGACTACAAGGCGACATTTGACTGAACATTGGGAAGATGTGGAATATGACAACTGTTTCAGCCCACATTTAGGATTCAAATGCCGCTATTGTCCAACACTATTTTGGCATGAAACGGACAGAGAGACTCATCAAGTTCGGGCACATTTCTTTAACCATAAGGAGGCCTATTACAAGTGTGAGAGCTGCAATGAAATATTTAGTGATAAGGTCTGGTACATTCACCACCACTTAGAGAAGCACAGTACTCCAGACAAGACATCTCTGTACCTCCTCAAATGTTCCCTCTGCTGCGTGGTGCTGCCAAGTATAGAGGAGATGAGAGGACACTTCAACTGTGAACACCCTGAAGCTAGGAAGGTCTTCTGTTCGTTAGACTCCTGTCAGTACAAACCTTTGTGTCACCGGAAGTCTTTCAAGCTTCATGTGCGGACGATGCACTCAACTCGGCAACGTCCGGAGCGAGCGGTGGAGTGCGCGGCGTGTGGGCGCGAGTTCAGCAGCGCGCGCGCGTGTGGAGCGCACATGGCGCAGGCGCACGGGCCCGGCAAGTTCAAGTGCAAGCTGTGCAGGGAGGTGCTGCACACTATGGACGAGAGAAAGCTCCACTACCTCATAAGTCACCCTGGCCAGCATCCGTTCGACTGCTCGGAGTGCGGGAAGTCGTTCCAGTACAAATCATCGCTATACATGCACAAGCAAGACCATCTGCCCAACAAGCAGAATTTCACCTGTACTTACTGTGGAAAGACTTTCCTGAAACGCGACTCGTTCCGGGAACACGTCCAGATCCACGAGGGCCCGCGTCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTACGTCACGAGCGCCGCCACACCGGCGAGCGTCCGTACATGTGCCCGCACTGTCCCCGCAGCTTTGCTGATAAAGGAGCTTGTAACTCACACACCAGgactcatttgaaagagacATCGTACGCTTGTGTGTACTGCGGGAAGACGTTTGTGCAGAAGTCCAAACTCACGTATCACACCAGAAAACATACTGGAGAAAATTTGGAAACGTGCACGGTGTGTTCAAAGTTGTTCACAAGTGCGTGCTCGCTGCGAGAACACATGAAGATACACGAACCTAAGAAGGAGCTGGTGAAGTGTCCTTTGTGTGACCGCAAGTATCAAGACGAGCGCTACATGCTGCGTCACCTGCGCACCTCACACTCTCACGCGCGACACCCCTGTCCCATCTGCCACAAGACGCTGACCAGCCCCGCTGGACTACGTCACCACGTCATCACTCACAGCACACTGAAGACCATCAGATGCAAAATGTGTCCAAAAGCTTACTCAGTGAAAAGAACAATGATCAAACATTTCCGACGTCGACATGGCTTTAAAGGCACCGAACCTAACATAAAAGAGTTCTACACTAGGCTGGACCCTAGAGAGTGCAACCTAGGTCTAGACGAATCGATCATGACCAGCATATTCGGACCTCCTCCAAAGAAACCGATGGACGAAATCCTAGTAGCAGATTACGTTACTGTAGCTAATATACCTGTAGAATCACATAAACCTGTAGAAGAAGATGGAGAAGAGAGTCAGACCACAGAAGATACACTAGACTCACTAATAGAGAAGTCTCAGTCAGAAGATGAAAAGACTGGAGAgagtcaaaagaaaacagatAGTCTTCAGACAGAAAAGCAAATTGAGATAAAGATTGAAGCTAAAGATCCGGCCGAACACAGCGTGGAGCTGGAACCTACTGACTTTGTGAGCGTTAAAATTGAACCATTGGATGAGCATGGCGGGGAGGAATCGTAG
Protein Sequence: MSSDESDDEPLSVIANKKLEPEQHEAFTSDSSESPIRKKKKLPPPKKLSVTIKLQRKKIAEQPPVIERPADVWLYLKDLNPSGPYSCLLCTDWFINRSKMIIHYVLNHKKDFCGVCRYFVPDREAWAKHLRFHNPWPCSQCVENLETEVELRHHLKSRHNLVHCRLCHFRLHDGDLYHTHLFQKHNVSNVSNKDEEDLWELEYDGTSNFLCLLCNKSTNSIRTFFNHYMGYHHFTLKCFAALLSGRDVPFSVYGADLRAEFVEEQLKHHERFGYVDSELQPSDCVIVDDPNQTILKVLIPEIKQEGDTADEAKNDDGTAKNNDDDDVYKSYNGIDDFDVTLMELIVVQKCYHDYITDILSDIDANSFFEYSDVDYEKLTTEVAMDIVCMLCSIRYSTLSSFASHMFKMHSIKSLPIFSCRVCATTFETQNELENHISNELGEFEDLWICQFCDKEFDDRETTRRHLTEHWEDVEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHFFNHKEAYYKCESCNEIFSDKVWYIHHHLEKHSTPDKTSLYLLKCSLCCVVLPSIEEMRGHFNCEHPEARKVFCSLDSCQYKPLCHRKSFKLHVRTMHSTRQRPERAVECAACGREFSSARACGAHMAQAHGPGKFKCKLCREVLHTMDERKLHYLISHPGQHPFDCSECGKSFQYKSSLYMHKQDHLPNKQNFTCTYCGKTFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYMCPHCPRSFADKGACNSHTRTHLKETSYACVYCGKTFVQKSKLTYHTRKHTGENLETCTVCSKLFTSACSLREHMKIHEPKKELVKCPLCDRKYQDERYMLRHLRTSHSHARHPCPICHKTLTSPAGLRHHVITHSTLKTIRCKMCPKAYSVKRTMIKHFRRRHGFKGTEPNIKEFYTRLDPRECNLGLDESIMTSIFGPPPKKPMDEILVADYVTVANIPVESHKPVEEDGEESQTTEDTLDSLIEKSQSEDEKTGESQKKTDSLQTEKQIEIKIEAKDPAEHSVELEPTDFVSVKIEPLDEHGGEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00758517;
90% Identity: -
80% Identity: -