Pneb046806.2
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- Hivep3
- Assembly
- GCA_951329385.1
- Location
- OX589608.1:11547875-11573896[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.3 1.6e+03 1.7 0.2 1 10 19 28 19 38 0.70 2 14 0.1 18 7.9 0.3 1 23 154 177 154 177 0.97 3 14 0.027 4.6 9.7 4.7 1 23 184 206 184 206 0.98 4 14 3 5.1e+02 3.3 0.8 2 22 211 231 210 233 0.83 5 14 0.0083 1.4 11.3 3.0 1 23 244 266 244 266 0.97 6 14 1.7e-05 0.0028 19.8 0.2 2 23 271 293 270 293 0.96 7 14 2.3e-07 4e-05 25.7 0.8 1 23 300 323 300 323 0.98 8 14 0.056 9.7 8.7 4.1 3 23 332 352 331 352 0.97 9 14 0.056 9.7 8.7 4.1 3 23 375 395 374 395 0.97 10 14 0.056 9.7 8.7 4.1 3 23 418 438 417 438 0.97 11 14 4.2e-06 0.00072 21.7 0.0 1 23 449 472 449 472 0.95 12 14 5.4e-05 0.0092 18.2 3.3 1 23 478 501 478 501 0.93 13 14 9.7e-06 0.0017 20.5 0.4 3 23 512 532 511 532 0.98 14 14 0.11 18 7.8 3.0 2 23 539 561 538 561 0.92
Sequence Information
- Coding Sequence
- ATGGCgtcgggatgtagggactggaactctctGATgATTGACTTGAAAAACACGTATATATGCAACATTTGTCATAACATGCTGAAAAAGATCGAAGTTTTCAAGCACCAAGTTAAAGAGAGCATAGCATTACTTTTAGATCAGGtaccaattttaaaaataaacaaactgcACAACTTCCAACGCTCGCCTATAGAAATTGACGGCGTAACTGAGACGGAAATAGAAGTCAAACCGGAACCAGAATGTTCGGAATTCGAAACGGATGTGAAAGTCGAACATGATTCTTCCGACGATGACACTGAACCTTTAGCggagttaaaaaagaaaaagaagaaaaagaaaactaagAATGAGTTGAGGTATGAAGGAAAGATAGGAATCGTGATATTAAGTGAAAAGGAACTTAGGGAGGAAAGAGAACGCATGGCTAAAAGTGAGGGATACTTGAAGCTGCCTTACAAATGTGAAGATTGTATTATCGGGTTTGATCACGAGTTGACGCTGGTCAGTCATATTGAGACGAGACATAAAAAGATGAAGAATGGATTCCAATGTCATGTTTGCAAGTCAGTATTGAGCACCAAGTTCTCTTACAATGAACATACAAAACGACACGTCAGGAGAATGGAATGCATGATATGCCGCAAGAGATACAACCACATGCAGTCAGCAGTACAACACTATGACGAGCAGCACGCTCCGGCCGGTGCGGGCATACAACAGGGCTATACTTGCAAGGAGTGTGGATTTACTACCACCTCAAACCGCGGGTATCGTTACCATAAAGACAAACACAAGAAGAAGCAGAGCTGTAATATTTGTGGAAATACGTTCGTCAACAGCAATGCACTTAAAGTTCATATGTACACAGTCCACAAACAATCCTCTCGCGAATACAAATGCGAGCAATGCAACAAGTCGTATCGCTCGCGCTCCGGTCTGGAAGCGCACCAGCGCTCGGCACACGGCACCACAGACACGCGCGCGTTTTGCGTGCTCTGTAAGACGCACTACCGCAACGCGCAGGGACTGCAGCATCACTTGAGCACCCACTCTAGACACGTCAGCGAGAGCGATAAGAGCGCACCAGCGCTCGGCATTACAGACACGCGCGCGTTCTGCGTGCTCTGTAAGACGCACTACCGCAACGCGCAGGGACTGCAGCATCACTTGAGCACCCACTCTAGACACGTCAGCGAGAGCGATAAGAGCGCACCAGCGCTCGGCATTACAGACACGCGCGCGTTCTGCGTGCTCTGTAAGACGCACTACCGCAACGCGCAGGGACTGCAGCATCACTTGAGCACCCACTCTAGACACGTCAGCGAGAGCGATAAGAGGTTCATTTGTGATGAATGTGGTGCCAAGTTCGTGACGAAGGGCAACCTGCAAGTGCACATTAACTGGGAGCACTTCAAGATCAACACACATCGTTGCAATAAGTGTACCAAGGTCTTCAAAAGCCGGAACGCACTGAACCGCCATGTTACCTACGTGCACAACAAGAAGAGACCGCCTCGTAACAAGATCTGTGACTACTGTGGAAGAGCCTTCACTACACAAACGATCCTACAGTCCCACATACGCACACACACAGGGGAACGTCCGCTGCACTGTTCGCATTGTCCTGCTACGTTTGCGCACACAGCTGCTCTATATACTCACAATAAACTGTTACATACTCccaaataa
- Protein Sequence
- MASGCRDWNSLMIDLKNTYICNICHNMLKKIEVFKHQVKESIALLLDQVPILKINKLHNFQRSPIEIDGVTETEIEVKPEPECSEFETDVKVEHDSSDDDTEPLAELKKKKKKKKTKNELRYEGKIGIVILSEKELREERERMAKSEGYLKLPYKCEDCIIGFDHELTLVSHIETRHKKMKNGFQCHVCKSVLSTKFSYNEHTKRHVRRMECMICRKRYNHMQSAVQHYDEQHAPAGAGIQQGYTCKECGFTTTSNRGYRYHKDKHKKKQSCNICGNTFVNSNALKVHMYTVHKQSSREYKCEQCNKSYRSRSGLEAHQRSAHGTTDTRAFCVLCKTHYRNAQGLQHHLSTHSRHVSESDKSAPALGITDTRAFCVLCKTHYRNAQGLQHHLSTHSRHVSESDKSAPALGITDTRAFCVLCKTHYRNAQGLQHHLSTHSRHVSESDKRFICDECGAKFVTKGNLQVHINWEHFKINTHRCNKCTKVFKSRNALNRHVTYVHNKKRPPRNKICDYCGRAFTTQTILQSHIRTHTGERPLHCSHCPATFAHTAALYTHNKLLHTPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -