Pneb046855.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- -
- Assembly
- GCA_951329385.1
- Location
- OX589608.1:12460241-12461449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0001 0.017 17.4 3.4 1 20 91 110 91 113 0.94 2 11 2.3e-05 0.004 19.4 0.5 1 23 119 141 119 141 0.97 3 11 0.0003 0.051 15.9 4.5 1 23 147 169 147 169 0.98 4 11 4.5e-07 7.7e-05 24.7 0.5 1 23 175 197 175 197 0.99 5 11 8e-05 0.014 17.7 5.0 1 23 203 225 203 225 0.98 6 11 3.2e-06 0.00055 22.1 4.0 1 23 231 253 231 253 0.98 7 11 6.3e-06 0.0011 21.1 2.5 1 23 259 281 259 281 0.98 8 11 7.3e-07 0.00013 24.1 2.1 1 23 287 309 287 309 0.99 9 11 5.1e-05 0.0087 18.3 1.7 1 23 315 337 315 337 0.99 10 11 0.17 29 7.2 3.1 1 23 343 366 343 366 0.89 11 11 3.4e-06 0.00058 22.0 1.2 1 23 372 394 372 394 0.97
Sequence Information
- Coding Sequence
- ATGTCtcacaaacaacatcaacatgATCGACCCTCAGTCATCAGATACGCACCCAAGAGAAACAGAAGAGACTCCATACCCACACCAAAGGAGAAGAGACTTTCCACACCTCCGCCAAGCACAGATCAAAGAGAGCAAACGCCTCCTCCATCCAGTTCTGACCCAAAAAATTCTTCAAAGCCTAGAAAAACAACCGCTCCCAGGAAAATAAAACCAAAGTTCTGCACATCACGAACTCAAATATGGCGACCATACGACAAGGAGAAGCGTTACAAATGTGACACGTGCAATAAAAGCTTCGACAAGAAATGCGACTTGAAGCGACATGTTCCCATTCACTCAATCGAGAAGCCGTTCAAATGTACGATTTGTAAACAGGCTTTCGTCCGTGAGAATCTTCTGAAAACTCACATAAGTGCACACAAGAATGAGAAACCTCACAAGTGTACTTATTGCGATTGCAGCTTCATGTTACCCGTAGATTTGAAACGCCACATTTTTACACACACCGGCgaaaaaccttataaatgtgattCTTGTGAGATGGCGTTCCGTCAACCTGGTGACTTGAAAAGACATATCCGGAAGCATACTGGTGAAAAACCTTACAAGTGTAATGTATGCCATAAGAGTTATGCACAACTGCACGGTTTGAAAAAGCATAATCTTACACATACAGGTGAAAAAGATCATAAGTGTGATCAATGTCAGAAATGTTTCAGTACCGCAGAAGCTTTGAAAACGCATGTCCGTATACATAGTGATGAACAGCCACATAAATGCGATGTCTGCGAAAGACGATTCACCCAACTGGAAGGCTTAAAGAAACATTACCGAGTGCACACCGGTGAAAAGCGATACAAATGTGAGACTTGTCAGAAACAATTCAGAGATTCACAGGATCTGAAGAAACATGTTCGTATACACACTGGCGACAAGCCTTTTAAGTGTGATAAGTGCCCGGACGCGTTTAAGGAGAGAGGTCATTGGAAAAGGCATATGCGTATACATACTAATGAAAAGCCGTACCACTGCAGTATTTGTTTGAAATCACGCTTTCGAGATGCGGCTGACCGTAGGAAGCATATTCGTACCCATATTCGTGATGAACCTTacaaatgtgatatttgtcaaaAGACTTTTGTTTATAAGACGACTTTGAAATCCCATCTTGCGTGGCATGAGAAAACTAAACCAGTTATTCATtag
- Protein Sequence
- MSHKQHQHDRPSVIRYAPKRNRRDSIPTPKEKRLSTPPPSTDQREQTPPPSSSDPKNSSKPRKTTAPRKIKPKFCTSRTQIWRPYDKEKRYKCDTCNKSFDKKCDLKRHVPIHSIEKPFKCTICKQAFVRENLLKTHISAHKNEKPHKCTYCDCSFMLPVDLKRHIFTHTGEKPYKCDSCEMAFRQPGDLKRHIRKHTGEKPYKCNVCHKSYAQLHGLKKHNLTHTGEKDHKCDQCQKCFSTAEALKTHVRIHSDEQPHKCDVCERRFTQLEGLKKHYRVHTGEKRYKCETCQKQFRDSQDLKKHVRIHTGDKPFKCDKCPDAFKERGHWKRHMRIHTNEKPYHCSICLKSRFRDAADRRKHIRTHIRDEPYKCDICQKTFVYKTTLKSHLAWHEKTKPVIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00375564;
- 90% Identity
- -
- 80% Identity
- -