Pneb058690.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- -
- Assembly
- GCA_951329385.1
- Location
- OX589615.1:11137326-11147749[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.00014 0.024 16.9 0.7 2 23 12 34 11 34 0.96 2 32 0.0001 0.018 17.3 3.4 1 23 39 61 39 62 0.96 3 32 0.0089 1.5 11.2 1.5 1 23 66 89 66 89 0.93 4 32 0.03 5.2 9.6 1.9 2 23 92 113 91 114 0.95 5 32 0.6 1e+02 5.5 0.8 2 20 120 138 120 143 0.91 6 32 0.016 2.8 10.4 2.8 2 23 188 210 187 210 0.93 7 32 3 5.2e+02 3.2 0.3 2 23 239 261 238 261 0.94 8 32 0.017 2.9 10.3 0.1 1 23 283 306 283 306 0.91 9 32 0.0034 0.59 12.5 3.2 1 23 349 371 349 371 0.96 10 32 0.046 7.8 9.0 0.1 3 23 400 421 400 421 0.96 11 32 0.011 1.9 10.9 1.9 1 23 441 464 441 464 0.96 12 32 4.7e-05 0.0081 18.4 0.5 1 23 469 492 469 492 0.96 13 32 0.0017 0.3 13.4 0.8 1 23 497 520 497 520 0.96 14 32 0.00095 0.16 14.3 1.1 3 23 524 545 523 545 0.95 15 32 0.014 2.4 10.6 1.4 2 21 553 572 552 573 0.94 16 32 0.006 1 11.8 3.4 1 23 627 650 627 650 0.96 17 32 1.1 1.9e+02 4.6 0.0 2 23 723 746 722 746 0.94 18 32 2.2e-05 0.0038 19.4 0.1 3 23 753 774 752 774 0.94 19 32 0.004 0.68 12.3 2.8 2 23 779 801 778 801 0.94 20 32 0.013 2.2 10.8 5.1 1 23 806 829 806 829 0.96 21 32 2.7e-05 0.0047 19.1 5.0 1 23 833 856 833 856 0.97 22 32 0.00032 0.055 15.8 0.3 2 23 863 884 862 884 0.96 23 32 0.0077 1.3 11.4 0.7 1 23 937 960 937 960 0.93 24 32 0.01 1.7 11.0 0.1 2 23 991 1013 990 1013 0.95 25 32 0.016 2.7 10.5 2.3 2 23 1036 1057 1036 1058 0.95 26 32 0.0012 0.21 14.0 1.7 1 23 1063 1086 1063 1086 0.97 27 32 0.073 13 8.3 0.2 1 23 1091 1114 1091 1114 0.93 28 32 0.0024 0.41 13.0 0.7 2 23 1120 1142 1119 1142 0.92 29 32 0.0016 0.28 13.5 0.2 2 23 1150 1172 1149 1172 0.97 30 32 0.25 43 6.7 0.0 2 23 1179 1200 1178 1200 0.95 31 32 5.2e-06 0.00089 21.4 0.6 1 23 1206 1228 1206 1228 0.92 32 32 1.7e-06 0.00028 23.0 1.3 1 23 1234 1257 1234 1257 0.97
Sequence Information
- Coding Sequence
- ATGCTTTTATCAGCGTACAGGCTAGTCGATCTCCAGTGCCTCCTTTGCGATAAAAGTTTCAACTTTTTACGTAAATTAATCAGCCATATGAATACTGCTCATCCTAATAACAGCTTTGAGTGTTCTGAATGTAAGAAGACATTTAACAAGAAGAGGGATTTAGATTCGCACTTAAGAGCCCATCATAAGAAGCACCACTCTTGTATGAAATGCGATGAAACGTTCCCAACGATCTCTGCGCTACATATCCATAGGTCTAACGCTCATTCTTCAACGTGCAACATTTGTTTCGAAGTATTTTCGTCAGACAGCAAGAGGTTAGCGCATCTAAAATCTCACCATGATACTGAACAAGCCCAATGTGGATTCTGCAGTAAAGTTCTACCaacaaaacaagcttttattagaCACGCTGCGAATTGCGAACATACACCTGAGGAAGAAACCGTCATAATTGATGACGAAGACAAAAAGATATctgtcaaagaaataagaaagaGTATAGCTGCAATCTTTAACATGACCactgcacttcctttcaaattctTTATGAATAGGTTACGATGCTTTTATTGCACGAGAGACTTTACCACATGCGAGGATTTAAAAGAGCATTCGCTGAGTGAACATCCACATTGCGATATAACCTTTAAGTCTATGAGATTAAGAAACAGATATGACGGTGTCCAAATCAAAGTTGACACTTCATCATTGTCATGTAGACTATGCCACATTGCTTTGCAAGACTTGAACGATTTGATCGACCATTTGACGAAAGAGCACAAGGTGAAATGCGACATGACTGTTGAGAGTAATCTGCAACCGTTCAAACTGATTAAAGACAACTACCCTTGTCCTTTTTGCGGTGAAGTGTATAGATATTTTGGCGTTTTACTCAAGCATGTTAGTGCGTCTCACAGTGGCAATAAACACATATATGGTCTGCCAGGACCGTACGAAGGCTGTACTTCTGAGCGACGACGGAAAAACTTGAAAATACTGTTCAACCACACTACGGTCATGCCTTTTAAATGGCGAGGCAAATACCTTTGCTTTTACTGCGGAAAAAACTATACAGAGTACACAGAATTTAGAAAACATACAAAATCTCACGGACCTTGCACCACTAAAGATTACTCCCTGAAACTAATCAAAGGGAATAACGTTGAAATTAAAATCGACGTCTCGGAAATCGGTTGTGACATCTGCAATGAACCCTTCAGCAGATTTGAGGAAATCATCGATCATTTGATCTCGAAACACAACATGGAATACAACAAAAATATCGATATACCCTTCCAAGAGTACCGATTGGTTGATTTCCGATGTTTGCACTGTGAAGAACAGTTTTCTTACTTCGGATATCTGGTCAAACATGTTAACAATGTTCACCCACAGAACTGTTTCATTTGTGATGATTGTGGGGTTACTTTTAACAAGAAAAGGGACTTGTCGATACATTTGAGGAATTATCATAGACAGGGTGGATACCCTTGCGATTTGTGCTTGAAGAACTTCGAAACTCGCCTCATGTTGCGGAGGCATCAAAATAATATGCATTTTAGACACTGCAAGAGCTGTGGTTTACGATTCGCGTCGCTTtctcttttacaaaaacatgTACAAGTCGATCATCCTCAAAATGAGAGCAATATGAAGTGTAGTTACTGTTCCAAAGAGTTCCACACTTCTTTAGGTCTAAAACAGCATATAAGCAAatgtaaagttaaaataatttctcaGGTCGAACCTCAAACTTCTTTTCTAAACGACAATAACATAGAGcctaagaaaaaacaaaatattctaCAAATAAGACAGAATATACAGTGTGTACTCAACATGTCGACGGCTGTGCCTTTCAAATTCTTTTCTAAATATTCCTGCTTTTATTGCTCAAAGAAATTCGTAGAATTCGACGAGTTACGCCACCATACTAACCTAGAACACCCTGTCTGCGATTTGAAGTCTAAATGCATGAAGAAATGCAAAGGAGAACGCATAGCTGTCAAAATCGACATTTCTGCGTTGGCTTGCAAAATATGTTGCCTTCCTATGCCTAACTTAGAAGATTTGATCACCCATTTAATAGCAGAACATAAGGCGAACTATGACACGTCAATTTCGGGCTGTTTAGAGCCTTTTCGGGTCATAAAAGACAATATGCCTTGTCCTATATGCCCGGATACCGTCTTCAGATACTTCGGAATTTTGCTTCGGCATATGAACTCCGAACATAGCAACAACAATCGAATCTGTGACTTTTGCGGGCGGAGCTTCAGGAATGCGGCAAATCTAAACGTACACATAACCTACGCACATACAGGCTCCTGCGAATGTGACATTTGTGGTGTCAAATACAAGAACCAATGGTGTTTAGCAAGGCATAGAGCAAGAACGCACGATGCAAAGGACCATAAATGCCCAAAATGTCCGGAGCAGTTCCAATCACAGtaccataaacaaaaacatttaataaaaatgcacAATGTTGGCCACAAGTGTAGTTATTGCGGTAAAATGTTCACTCGAAACTCTTTCATGAAAGATCATGTTAGAAGAACTCATTTGAAAGAAAAGAATATTCCTTGTTCTATTTGCAATGAGAAATTTTTCGATAATTATCTTCTAAGGATGCATATGGTGAAACACGAGGGTGATAGGAAATTCAGTTGTTCAAAATTCAATACAGTGGAGGACAAATATAAGAAAATGGAAGTCGCCCGTAAGCTCTTGATAAAACGGCGGAATGTCGAATATGTGTTACAGTATAGCAATGTCACGCCTTTCATGTGGCATAAGGGGAAATATAAATGCTTTTACTGCAACGAGACTACGAAAGACCCAGATGTTCTTCGAGAGCATACGACGGAATCTCACCAATTTGCCAATCTAGAACTGGTTGTCTTTGACAGAACCAAAAATAACCGAAATAAGGATGCCGCTGTCAAAATTGACGTTACCAATATACGTTGCAAGCTTTGTCCACAAGCTGTGACGAATTTAGAAGAGCTGATACACCATTTGATTATCGCCCATGACGCGGAGTATGATGTCAGTGTTCCTAACTGTCTTCTGCCTTTCAAATTAGATAAGGACCAACCGACATGCCCAACTTGCAATATGAAGTTCGTTTTCTTTGAGTATCTTCTGCGCCACGCCAATAAACATCATCTTTCCCACCACTACATTTGCGACGTTTGTGGCACCAGCTTCCAAGGAGAGAACCATTTGAAAATGCACTACAGATACTATCACAGAGAAGGTGGTTATACCTGTGAATACTGTGGCATAAGTCTTGCTACACTGTCCAAAAAGATTCTTCACGAAAAGAACGTGCATTTAGTCAACCTATCGACCTGCCCGCATTGTCctgaaacctttaaaagtcctTACCTAAAGAAGCTTCATTTAGCAAACGTACATGAGGTGGAAGAACTCAAAATCAAATGCCCGTTTTGTCCGAAAGTGTATCCACAAGAATCGATAATGTCACGTCATATGAGAAGGGTACATCTTAGAGAAAAGAATGTAGAATGCGAGGTTTGTGGGGACAAATTTTTTGGGCCATATGACGTGAAACTCCACATGGTCAAGCACAATGGCGAAAAGAAATTCGTTTGTTCGGTTTGTGGCAAAAAATTCTCCAAGCGAAGTAATTTGAACTCCCATGCCGTATTACATACGAAAGAGAAGGACTATGTATGTGAGGTTTGCAATAAGGCATTTGCACACCAAACAAATTTGCGAATGCATATCCGTAATAGACACAGTCGGTTCGATCTAGCTCCTATAGTTGACGAAATTGATGAAAGCGATATGGTACAAATGGAAATAATTCAGGAGGAGTTAGAAGGAGAAGTGGCTGGCCAATATATTCAATGA
- Protein Sequence
- MLLSAYRLVDLQCLLCDKSFNFLRKLISHMNTAHPNNSFECSECKKTFNKKRDLDSHLRAHHKKHHSCMKCDETFPTISALHIHRSNAHSSTCNICFEVFSSDSKRLAHLKSHHDTEQAQCGFCSKVLPTKQAFIRHAANCEHTPEEETVIIDDEDKKISVKEIRKSIAAIFNMTTALPFKFFMNRLRCFYCTRDFTTCEDLKEHSLSEHPHCDITFKSMRLRNRYDGVQIKVDTSSLSCRLCHIALQDLNDLIDHLTKEHKVKCDMTVESNLQPFKLIKDNYPCPFCGEVYRYFGVLLKHVSASHSGNKHIYGLPGPYEGCTSERRRKNLKILFNHTTVMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGPCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLHCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLKQHISKCKVKIISQVEPQTSFLNDNNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTNLEHPVCDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLITHLIAEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCSKFNTVEDKYKKMEVARKLLIKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPDVLREHTTESHQFANLELVVFDRTKNNRNKDAAVKIDVTNIRCKLCPQAVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGISLATLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHLANVHEVEELKIKCPFCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGEKKFVCSVCGKKFSKRSNLNSHAVLHTKEKDYVCEVCNKAFAHQTNLRMHIRNRHSRFDLAPIVDEIDESDMVQMEIIQEELEGEVAGQYIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118585;
- 90% Identity
- -
- 80% Identity
- -