Pneb013711.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polia nebulosa
Gene Symbol
-
Assembly
GCA_951329385.1
Location
OX589591.1:11806333-11828927[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.6e-05 0.016 17.4 2.2 1 23 425 447 425 447 0.97
2 20 0.005 0.85 12.0 0.6 1 20 453 472 453 475 0.94
3 20 2.5e-05 0.0043 19.2 5.6 1 23 494 516 494 516 0.98
4 20 0.00012 0.02 17.2 4.1 1 23 522 544 522 544 0.99
5 20 4.4e-05 0.0076 18.5 5.3 1 23 550 572 550 572 0.97
6 20 1e-05 0.0017 20.5 7.4 1 23 578 600 578 600 0.97
7 20 8.6e-07 0.00015 23.9 2.9 1 23 606 628 606 628 0.97
8 20 0.00012 0.021 17.1 6.7 1 23 634 656 634 656 0.97
9 20 0.00012 0.021 17.1 6.5 1 23 662 684 662 684 0.97
10 20 5.8e-07 0.0001 24.4 1.9 1 23 690 712 690 712 0.98
11 20 1.2e-05 0.002 20.3 7.7 1 23 718 740 718 740 0.98
12 20 0.00016 0.027 16.7 6.8 1 23 746 768 746 768 0.97
13 20 2.4e-06 0.00041 22.5 4.4 1 23 774 796 774 796 0.98
14 20 2.9e-06 0.0005 22.2 5.2 1 23 802 824 802 824 0.96
15 20 2.5e-06 0.00043 22.4 5.8 1 23 830 852 830 852 0.98
16 20 2.8e-05 0.0047 19.1 5.9 1 23 858 880 858 880 0.98
17 20 7.1e-05 0.012 17.8 7.9 1 23 886 908 886 908 0.97
18 20 3.9e-05 0.0066 18.7 6.6 1 23 914 936 914 936 0.97
19 20 0.00087 0.15 14.4 0.3 1 23 943 965 943 965 0.96
20 20 0.37 64 6.1 4.9 1 23 977 999 977 999 0.99

Sequence Information

Coding Sequence
ATGAATCAGGATCACCATAATATGAACACGGGTGGTGGCCAGCCTCCGGGAAGTTCTGAGTCACAGGTCCAAAGAATTCAAGTCACCCAGCAGCAACAACAGAACTTGCCTGCCACGACATCTGCTACTGATTTGCGAGTGAACTCAGCAGCAGTGAACGTTGCTTTGTCTAGTGTCGCGAAATATTGGGtgtttacaaatttatttcCCGGACCTATACCGCAAGTGTCTGTGTACGGATTGCCAGCTGGTGCTAGGATTGAAAATGGAAAGACTGTTCAGGACCTTGGGCAAGCTCATGCAAGTATACTGAATGGGGATCCAAATATTATACTTGGCCATCATGCAGGCCAGGGACAAGTTACAGTGTCTGCTCCCGGTGGTCAGCAGATACCAGTTTCACAGATCATCGCCACACAGTCTGGACAAACTCATGAAGCTCTTGTGGCCCATAGTCAGCAACAAGTCGAGCTGGCGGCGGCCCAGGCCTCCGCAAACAACGCGCAGGTGTCAGTTAGTGCAGGCCAGGCCACTCACCAGCAGGTACCCAATAATCGGGTCGAATTTGTACAACACCATAACATTGATATGggccaccaccaacaacacatAATGCAGCAGCAACTGATGGCGCAAGCACGGCCAGAACACAGCAACCAACAGATCCAACTGACGGTAAGCGAGGACGGCATCGTAACGGTGGTAGAACCGGCGGGCACAAAGATGGTCGACAAGGAGGAACTCCATGAGGCCATCAAGATGCCCAACGACCACACGCTCACTGTTCACCAGCTGCAACAAATAGTTGGACAACAGGTAATAGACAGCGTAGTACGCATAGAGCAGGCTACTGGTGAGCCGGCGAACATCTTAGTGACCCACAATCCTGACGGCACAACGTCTATTGAAGCCAGCGCCGCCGACCCTCTGATTGTCAAGGACGAGAAAAGTGCTAACAAAATTGAGACCGCACAGTTTGCTATACCTACTGAGATAAAGGATATAAAGGGAATTGACTTGAAGAGTGTAGGAGCCATGGGTATGGAAGGTGCAGTAGTGAAAATATCAGCTGGCGCGTCAGAACACGACATTCACGCGATGTACAAAGTCAATGTGGAAGATCTGTCACAACTGCTTGCGTACCATGAAGTCTTCGGGAAACTTAACACGGAAGGGCAGCAACAACAAGCTAAGGTAATAAGTGAGGTGGAAGTCGAAGTGGAAGCCGGTACCAGCGCAGCTATGTCAGAAGCCGAATCCTCGCCTGGCCACCACTCATGTGATATTTGCGGCAAAATATTCCAGTTCCGATACCAACTTATTGTTCATAGGCGTTATCACGGCGAAAGTAAACCTTTCACGTGTCAAGTTTGCGGTTCCGCTTTTGCAAATCCTGTCGAATTATCCAGGCATGGAAAATGCCATCTTGCTGGAGACCCGAACGAAAGACACGCTAAAAGGATAGCTCAAGATAAGCCATATGCTTGCACAACTTGCCACAAAACGTTCTCCCGGAAAGAACATTTGGACAATCACGTTCGAAGTCACACCGGAGAAACTCCTTACAGATGCGAATTCTGCGCGAAGACTTTCACTCGCAAAGAGCACATGGTCAACCACGTACGAAAACATACGGGAGAGACTCCGCATCGATGTGATATCTGCAAGAAGAGTTTTACAAGGAAAGAACACTTCATGAACCATGTTATGTGGCACACAGGTGAGACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCGTTCCGATGCGAACTGTGCGGCAAGTCGTTTACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAAACTCCTCACCGCTGCGACTTCTGTTCAAAGACGTTCACTCGCAAGGAGCATCTCCTGAATCACGTCCGTCAGCACACGGGCGAGTCTCCTCACCGCTGCAACTTCTGCAGCAAGTCGTTCACAAGGCGAGAACACCTCGTCAACCACGTGCGGCAACACACCGGGGAGACGCCCTTCCAGTGCGGATACTGTCCTAAAGCGTTCACGAGGAAGGATCACCTCGTGAACCATGTCCGCCAGCACACAGGCGAGTCTCCGCACAAGTGTTCGTACTGCACAAAGTCATTCACTCGCAAGGAGCATCTGACGAATCACGTGCGGCAACACACGGGCGAGTCCCCGCATCGATGTACTTTCTGCGCCAAATCCTTCACGAGGAAGGAACACCTCACTAACCACGTCAGACAGCACACGGGAGAAACGCCACACAAGTGCACGTACTGCCCGCGGGCCTTCGCGCGCAAGGAGCACCTTACCAACCACATCCGCCAGCACACCGGCGTCACGCCGCACGCCTGCACCTACTGCAACAAGAGCTTCACCAGAAAGGAACATCTCGTTAATCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTTTTGTTCAAAGTCGTTTTCTCGTAAGGAGCATCTCACGAACCACATGAACCTTCACACAGGACAAACGCCCCACAAATGTGCTTTCTGCTCAAAAACATTTTCCAGGAAAGAACATTTGACCAACCACGTAAGGATTCACACGGGAGAGTCTCCGCACCGCTGCGACTTCTGCCAGAAGACGTTCACTCGCAAGGAGCACCTGACGAATCATCTGAAGCAGCACACCGGCGACACCGCACACGTCTGCAAGGTGTGCTCTAAGCACTTCACCAGGAAAGAACATCTCGTCACGCACATGAGGGCGCACAGTTGTGGCGAGCGTCCATTCAGTTGCGGCGAGTGCGGAAAATCTTTCCCATTGAAAGGCAACCTACTGTTCCACGAACGATCGCACAACAAGAACAATGCCAATGCTACCAATAAACCATACCGGTGTGAAGTCTGCTCTAAAGAGTTCCTCTGTAAAGGTCATTTGGTGTCTCATCGGCGCACACACGCAACGGAATGGGCGGAAGGCACCGCAACTGGCGAAACACCCGCTGAAACAGAAGACTGTACTGAAAATAAGTGTATCAAAGTTGAGCCAGAACGAACTGAAAGGAAACATGAAGTCagGACTTCAGTCGAAACGAGACCAGCTGAGAGCAATGTCGCACAAAGTCAACCAAACACAGCTACAGTGATGATAACTAATAATCAACAAGTACGCCCGGCTAACGTAAGCGCGGTGGGAGCGGTAAGCGCAGTGGGAGCGGTGAGCGGGGTGGGTGTGAGTGCAGGCCCGGGCGTGGCGGCTACGTTCGCCCACAGTGTGGCCACGCAGCACCACGCCGGCGCCAACATCGCACACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNQDHHNMNTGGGQPPGSSESQVQRIQVTQQQQQNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKTVQDLGQAHASILNGDPNIILGHHAGQGQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHSQQQVELAAAQASANNAQVSVSAGQATHQQVPNNRVEFVQHHNIDMGHHQQHIMQQQLMAQARPEHSNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKSANKIETAQFAIPTEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDIHAMYKVNVEDLSQLLAYHEVFGKLNTEGQQQQAKVISEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRIAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLTNHIRQHTGVTPHACTYCNKSFTRKEHLVNHIRQHTGETPFKCTFCSKSFSRKEHLTNHMNLHTGQTPHKCAFCSKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKHFTRKEHLVTHMRAHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNNANATNKPYRCEVCSKEFLCKGHLVSHRRTHATEWAEGTATGETPAETEDCTENKCIKVEPERTERKHEVRTSVETRPAESNVAQSQPNTATVMITNNQQVRPANVSAVGAVSAVGAVSGVGVSAGPGVAATFAHSVATQHHAGANIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_01030446;
80% Identity
-