Pneb045229.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polia nebulosa
Gene Symbol
-
Assembly
GCA_951329385.1
Location
OX589607.1:17941765-17958269[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00012 0.02 17.1 0.1 3 23 135 155 134 155 0.97
2 19 1.1e-06 0.00018 23.6 1.2 1 23 161 183 161 183 0.99
3 19 6.6e-06 0.0011 21.1 2.7 1 23 189 211 189 211 0.99
4 19 4.4e-06 0.00075 21.6 2.6 1 23 226 248 226 248 0.98
5 19 0.00019 0.033 16.5 0.6 1 23 263 285 263 285 0.98
6 19 6.1e-05 0.01 18.0 3.1 1 23 300 322 300 322 0.98
7 19 4.2e-07 7.2e-05 24.8 1.5 1 23 337 359 337 359 0.99
8 19 0.00019 0.032 16.5 2.8 1 23 365 387 365 387 0.98
9 19 5.5e-05 0.0094 18.2 0.0 1 23 394 416 394 416 0.97
10 19 1.3e-05 0.0023 20.1 2.1 1 23 422 444 422 444 0.99
11 19 0.043 7.3 9.1 1.8 1 23 451 473 451 473 0.98
12 19 7.2e-07 0.00012 24.1 2.3 1 23 479 501 479 501 0.99
13 19 0.05 8.5 8.9 1.8 1 23 508 530 508 530 0.98
14 19 2.9e-06 0.0005 22.2 1.5 1 23 536 558 536 558 0.99
15 19 0.00056 0.095 15.0 0.7 1 23 565 587 565 587 0.99
16 19 3.2e-06 0.00055 22.1 1.9 1 23 593 615 593 615 0.98
17 19 0.0024 0.4 13.0 0.3 1 20 621 640 621 643 0.93
18 19 3.9e-05 0.0067 18.7 1.3 2 23 650 671 649 671 0.96
19 19 3.5e-06 0.00061 21.9 1.3 1 23 677 700 677 700 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCATCCCCACGTACACTCCGGTCCCCCAACAATAATACGGTCAGACTCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAAGCACACCAAGAGGATTCTAAAGACAGCCTCATAGTACAACATCAAGTACAACACCAGCAAGATCTCATggaacaacatcaacaacaacaagaaaTGCAGCAACAAGACGACGAGCTGAGCTTCAAAGGAATGGAAGATGAAGGAGTTGACATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCAGTTCAAACTAAAATGGAAGTGTCAAATGGGGGTCAGTCGACGCCACGATCTAAACCTCAGGCCTGTAAGGTCTGTGGCAAAGTTCTGTCGTCGGCTTCCTCTTACTATGTCCACATGAAGCTTCACTCAGGAAACAAACCTTTTCAGTGCACTGTGTGCGACGCAGCTTTTTGCCGTAAGCCGTACCTAGAAGTGCACATGCGCACACACACAGGGGAGCGCCCCTTCCAGTGCGATCTCTGCCTCAAGCGATTCACGCAGAAGTCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGTGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCAACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACGTGCAAGCAGTACTTGGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACGCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACACTCAACATTCACAAGCGAATTCATACCGGTGAACGTCCTTATGcttgtgatatttgtcagaaaCGTTTTGCTGTGAAGAGCTACGTAACAGCGCACAGATGGTCTCACGTGGCCGACAAGCCGCTGAATTGCGACCGCTGCTCCATGTCGTTCACGTCCAAGTCGCAGTTCGCACTGCACATCCGCACGCACTCCACAGGCTCTTGCTACGAGTGCAGCGTCTGCGGACGCTCCTTCGTCAGGGACAGCTATCTAATAAGACACCACAACCGTGTCCATCGCGAGAACCACAGCAACGTGTCGGCGAACAGCATGGGCACCATCAACAGCGTTGCTACCAACACCAACAACTCCAGTAACTTTGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTTCCCATGGTGAATCGTTACATGACATCTCAAGGGACCCAAGTGTCCATGCAGGATACTAGCAAAATGTCTGCGATGTCACCGCAGTCTATCGCGTCTATATCGTCGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIIRSDSSHASIINMNQHHQAHQEDSKDSLIVQHQVQHQQDLMEQHQQQQEMQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPNLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSMGTINSVATNTNNSSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01085626;
80% Identity
-