Pneb002602.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- -
- Assembly
- GCA_951329385.1
- Location
- OX589587.1:25646113-25646544[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-08 8.4e-05 24.0 0.0 1 41 18 59 18 61 0.91 2 2 9.3 8.1e+03 -1.5 0.0 14 24 131 140 123 141 0.63
Sequence Information
- Coding Sequence
- atgccgcgaaaacataaaaaaaagttgggaGCTCGTCAATATGAAAACTATGACAACGAAAAATTAATTCAGTGCTTGGAATCTATCAAACAAAAGCAAATGACCCAAAGGGCTGCTTCTGAGTTTTATAATATTCCAAGAAGgactataaattataaactaAAAGAATTGCATTTGCCAAAGCCTGGTAGACCAACGGTTTTGACCCAAGAGGAGGAAAGAATGATTCAAGATTGTATTATCCAAGTCGGTGAATATGGATTCCCTGTAGAGAAATTAGAACTTAGAATGATAGTTAAAAGCTATTTAAACAGACAAGGAAGGGACGTCCCtcaattaaaagaaaatatgcCTGGAGAGAAATGGGTCAATTCATATCTTGAAAGACATAATGAAATCAGTACAAGACTAGCAGCTAACATAAAAAAGTAG
- Protein Sequence
- MPRKHKKKLGARQYENYDNEKLIQCLESIKQKQMTQRAASEFYNIPRRTINYKLKELHLPKPGRPTVLTQEEERMIQDCIIQVGEYGFPVEKLELRMIVKSYLNRQGRDVPQLKENMPGEKWVNSYLERHNEISTRLAANIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -