Basic Information

Insect: Polia nebulosa
Gene Symbol: clz9_10
Assembly: GCA_951329385.1
Location: OX589600.1:19226266-19230751[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.5e-09 3.1e-06 28.7 0.0 2 39 15 52 14 58 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.5e-09	3.1e-06	28.7	0.0	2	39	15	52	14	58	0.87

Sequence Information

Coding Sequence: ATGCCGCGAACTTAcataagaaagaaaattaaaacatacaGTCCACAAGATTTAGCTCAAGCGATCGCAAAGGTAAAAAATGGAGAACTTACGCAATATAGAGCAGCGCAAGAATATAAAATTCCAATGACGACTCTTCatgaaaatttaagaaaaagtaAAGAAACTACTAGACCAAATTCAGGTAGGCCAACTGTTATACACCTAGAAGATGAGAAAAAAATAGCCGAAACTATCAGAATTATAGAAAAATGGGGATATGGTCTGTCTAGGTTTGAAATTATGGAGCTTGTCGCTGAATATGTGCGGGTGAATTTGATTCTAACACCATTTAAAAACAATGTGCCAGGCACAGATTGGTTCATTAATTTCCGGAAACGACATGGATTATCAATTAAAAAAGCACAGCCTGTAGAATTTGTAAGAAGGAAAATGACGGATCCATTCGTCATTGGTGAATATTTCGATTTGCTGCAAAATACTCTAAAAGATTTGGATCTTTTTGAAAgtccccaatttatttggaactTAGATGAAACGTCGTTATGTCTGGATCCATCCAGAACAAAAGTAGTTGGACAAATAAACAAACCTTGTGCGAGGACTACCCATGGGAGTggaaaagaaaatataaccGTGTTGACAGGTGTAAGCGCTAGTGACAAGAAGTTGCCGCCTTTAATTGTATTTAAAGGTAAAAATGTTTGGGATCAGTGGATGGCTGAACTGGACGGTGGTGATTACGATTTCGAATTATCGTATGCAGCCAGTACTAAGGGGTGGATGGAAACAGACATTTTctataattatatagaaaaagttCTTATCCCAAGTCTGGGCGAGGAGCGCCCGGTTCTTATTGTTTATGACGGTCACTCAACTCACGTCCATGTTACAGTTGTGGAGCTGGCAATACAAAACCATATCACAATTCTTAGACTACCGCCCCACACCTCACATTTGCTGCAGCCTCTTGATATAGTAGTATTCAAGTCAATATGGGATGCCAAGCTGGTAGAGAGGCAGCGTAGAAATATTGGcacaaaaatgccaaaaaaagtttttgctcAAACGCTGGCAGATACTTGGCAACAAACAAACCCCGATATAATCAAAAGTGGATTTAGAAAAGCTGGGATTTTCCCTTTTAATGCGTACGTAATACCTGTGGATAAGTATGACCCAGATGCATACAGAAGGAGTAACAGAAAACAGAACTTACCTATAATGTCACGAGCTAGAATCAGCCGCTTGGTGAAGCTAGCTATTAGTACTAGTACCGGTGAATTCAGCGAAGAGCAAGCTAGCTCAGTTAGTCAACCCAGCTTAAGTCAGGGGGAGTCTACGAACAAAGTCGATGATGCGGCAGGCGCTCACGTACAATCAACGACAGCAGAACCCGTCGTAGAACAGCATAATATGAGAGAGCAACAATGGCTTACACATCCATCAGAAGCCGAACTAACGCCCGAGATTAGGGCGATTACGCCCAATGAGTTTCATGGTATAATGGAGTACACAACACAGACCCATCCTGAAGAAATTGAAAGACACGATGAAGGCACGCAAAATCAATTAGATACTGATTTTAGTTCAGGATCGGATGAATTGTATGCCCCACCCGAAAGTGAGTATGACACTGATGTACAAGCGGATGATTGTGTTGGATCAGTGATTGAAATTTCAACTCAAGATTGCTCGGTGGCTGATGAAACGACACAACAGCCGCTATCGATATCGGATACGGACCGAAATAGACCAGATCAAGAACAACCAAAACCAAGAAAGCGTAAGGGTCAAGTTAACATGAATGAGTGGAAGAGATTGAAAAATGCTAAGTTAAGATTAGAGGGGAAGTCTTATCTTGGATTTGAAAAACAGGAAAGTGGGAAATACAAGcaaactaaaattaaacaaGCTAAATGCCTAGGTCCTAGATGTAATGGGCATCCACAGCCGACAACAGTTAAAGGAGGCCCAAGACAAGATTTCAAATGCGATACGATTAGTGAGGATGATCGAAAGTCAATACATTCGTACTTTTGGAATCTGACATCTTGGGAGGCTAAAAAGGTTTACGTCACTGGATGTGTATTACAGGCACGTCCAAAGTATAGAAGAAAGACTACTGATGTTGCCACTTCAAGAAAAAACACTGGATTTACATTCTACTTGACTGTAAAAGAAAATGGAGATGATGTGAAGAAACGTGTATGCCGAAATATGTTTATCAACACTTTAAATATTGGTGAGAAGACTGTCCGCACGTGGATTTTGTCAGAACAACCCAGTACAAGCCAAGAAAACGAAGAACACCAAGCTCAGACCCCACAACGAAGATCAAACATTGTTACGAATCTAGAGGAATTCCTGAATTCACTACCCAAAGTAGAAAGCCATTATTGTCGAGCGTCATCCAGTAAACTCTACGTAGAACCCTTGTGGTCTAGTTTAAGAGAGATGTACCGCTTTTATAAAGATGAGtgccaaaaacaaaacaaaattgcttCATCTTGGAAAACCTTCTACAATACTTTGAAAGCTATGAACTTAGATCTTTATATTCCGAAAAAGGATCAATGTAATACATGTACACAGTATAAGACAGGAACATGCGATGAAGAAATATTTCGGAAACATGAGCAAAAGAAACAATCAGCAAGAGAAGAGAAAACAAGAGACAAAGAACAATCCATTAATTGTCCTAATACGGAAACCTATACTGTAGATCTACAGGCTGTGCTATTGGCTCCGAGACTAAATGCCAGTGCGAATTACTACAAGACTAAATTGAAAGTCCACAATGAGACCTTTCTTAACTTAAGTACTAAAGATGCTGTATGCTATGTTTGGCATGAAGCTGTGGCAGGGATTGAAAGTGATGTATTTGCATCAATTTATACAGACTTTTTACAAAAGGCAATAGAAAAAAGACACCccgaaaaaattacaatttggaGTGACGGATGTGGATATCAGaaccgaaatattaaactttctaATGCATTGCTAGAATTGAGCATTAAAACAAACctaataatagaacaaaaatatttggaaGTTGGACACACCTTCATGGAAGTGGACTCCATTCATTCTACTATTGAGCAGAAATTGCGCAATCGAAGAGAAGTCTATACACCAGCAGACTACATTCCAATAATTCAAGCTGCAAGACAACGTCCGCGTCCTTATGAAACAATTTACTGTAGTTGTGATGATTTTTATACATTTCAGCCAGTATACTACAAAAGTATTCGCCCTGGCAACAAAGTTGGCGATCCCTACGAATGGGCTGATTTACCTGTACGACCAAAGCGTCTGGAATCACTGCCAGAGCATCCCAAACTGTACACAGGACCAATTCCAATTGAAACTTCGAAATATACGCACTTGCAAGAACTAAAACAATTGATTCCACAAGATTATCGTCaattttatgaaactttacttcacaaataa
Protein Sequence: MPRTYIRKKIKTYSPQDLAQAIAKVKNGELTQYRAAQEYKIPMTTLHENLRKSKETTRPNSGRPTVIHLEDEKKIAETIRIIEKWGYGLSRFEIMELVAEYVRVNLILTPFKNNVPGTDWFINFRKRHGLSIKKAQPVEFVRRKMTDPFVIGEYFDLLQNTLKDLDLFESPQFIWNLDETSLCLDPSRTKVVGQINKPCARTTHGSGKENITVLTGVSASDKKLPPLIVFKGKNVWDQWMAELDGGDYDFELSYAASTKGWMETDIFYNYIEKVLIPSLGEERPVLIVYDGHSTHVHVTVVELAIQNHITILRLPPHTSHLLQPLDIVVFKSIWDAKLVERQRRNIGTKMPKKVFAQTLADTWQQTNPDIIKSGFRKAGIFPFNAYVIPVDKYDPDAYRRSNRKQNLPIMSRARISRLVKLAISTSTGEFSEEQASSVSQPSLSQGESTNKVDDAAGAHVQSTTAEPVVEQHNMREQQWLTHPSEAELTPEIRAITPNEFHGIMEYTTQTHPEEIERHDEGTQNQLDTDFSSGSDELYAPPESEYDTDVQADDCVGSVIEISTQDCSVADETTQQPLSISDTDRNRPDQEQPKPRKRKGQVNMNEWKRLKNAKLRLEGKSYLGFEKQESGKYKQTKIKQAKCLGPRCNGHPQPTTVKGGPRQDFKCDTISEDDRKSIHSYFWNLTSWEAKKVYVTGCVLQARPKYRRKTTDVATSRKNTGFTFYLTVKENGDDVKKRVCRNMFINTLNIGEKTVRTWILSEQPSTSQENEEHQAQTPQRRSNIVTNLEEFLNSLPKVESHYCRASSSKLYVEPLWSSLREMYRFYKDECQKQNKIASSWKTFYNTLKAMNLDLYIPKKDQCNTCTQYKTGTCDEEIFRKHEQKKQSAREEKTRDKEQSINCPNTETYTVDLQAVLLAPRLNASANYYKTKLKVHNETFLNLSTKDAVCYVWHEAVAGIESDVFASIYTDFLQKAIEKRHPEKITIWSDGCGYQNRNIKLSNALLELSIKTNLIIEQKYLEVGHTFMEVDSIHSTIEQKLRNRREVYTPADYIPIIQAARQRPRPYETIYCSCDDFYTFQPVYYKSIRPGNKVGDPYEWADLPVRPKRLESLPEHPKLYTGPIPIETSKYTHLQELKQLIPQDYRQFYETLLHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -