Pneb043478.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- -
- Assembly
- GCA_951329385.1
- Location
- OX589606.1:22314249-22314611[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-09 4.4e-06 28.1 0.0 2 44 19 62 18 63 0.92 2 2 6 5.2e+03 -0.9 0.0 3 12 99 108 97 109 0.81
Sequence Information
- Coding Sequence
- ATGCCGAATGAATACAGAAGAAAACCTACTGGCTCTAATAGAGCTACATGGAGTGAAGGAGACTTGGAAAAAGCCATTACTCAAGTGAAAGATAAATCATTGAATTTTTTTCAAGCAAGTAAAGAATACAATATTCCTTACAGAACTCTTCGCTGTCGATTTCTCACAGGCAATACTAAAAAAGGACGACTTGGACCCGACTCTCTGTTtgaagacaaagaaaaaaagattgTTAATCATATCAAGAAGTTGCAAAGCCGTGGGTTTGCGCCTACTATCTTAATCTTAAAGAAAACTCAGATGATTCGAGCATTGAGGACGATCATATTTCTCTTCATGATAGTTCACCAGAAAGGGACATAG
- Protein Sequence
- MPNEYRRKPTGSNRATWSEGDLEKAITQVKDKSLNFFQASKEYNIPYRTLRCRFLTGNTKKGRLGPDSLFEDKEKKIVNHIKKLQSRGFAPTILILKKTQMIRALRTIIFLFMIVHQKGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01085103;
- 90% Identity
- -
- 80% Identity
- -