Pcha008926.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- nfxl1
- Assembly
- GCA_002278615.1
- Location
- CM008230.1:1781472-1784804[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3 2.2e+04 -5.0 1.9 15 19 158 162 158 162 0.85 2 20 0.34 2.4e+03 -1.1 0.3 4 10 193 199 192 199 0.94 3 20 6.6e-08 0.00047 20.4 16.6 1 19 207 224 207 224 0.99 4 20 3 2.2e+04 -5.1 0.9 15 18 250 254 250 255 0.48 5 20 1.4e-06 0.0098 16.1 13.1 1 19 260 278 260 278 0.92 6 20 3 2.2e+04 -4.2 1.4 6 10 303 307 302 307 0.88 7 20 1.1e-05 0.081 13.2 9.9 1 18 313 330 313 331 0.97 8 20 1.2e-05 0.089 13.1 12.7 1 18 366 383 366 384 0.97 9 20 1.6 1.1e+04 -3.2 0.2 1 4 393 396 393 397 0.88 10 20 0.00014 0.99 9.8 15.3 1 18 418 435 418 436 0.93 11 20 4.4e-10 3.2e-06 27.3 12.0 1 19 445 463 445 463 0.97 12 20 0.00027 1.9 8.8 6.5 9 19 511 521 509 521 0.87 13 20 0.0026 18 5.7 5.9 4 12 532 540 530 540 0.89 14 20 3 2.2e+04 -4.8 4.6 16 19 567 570 565 573 0.55 15 20 3 2.2e+04 -4.4 1.4 6 10 599 603 598 603 0.58 16 20 8.3e-05 0.6 10.4 6.5 1 11 609 619 609 620 0.99 17 20 0.65 4.7e+03 -2.0 1.2 5 10 636 641 636 641 0.92 18 20 0.0011 7.6 6.9 15.3 3 19 650 666 649 666 0.94 19 20 2.9e-05 0.21 11.9 13.7 1 17 710 728 710 730 0.86 20 20 1 7.5e+03 -2.6 0.7 5 10 759 764 759 764 0.93
Sequence Information
- Coding Sequence
- atgaattctgGACGAGGTAAAAAGTCTGGAAATGTTTGGAATACAAATCCTTCAAAAACATCGAATGCAGTTAATTCATCGactgaaactaaatttaaagaagcgcaacaaaaattacaagcagctgttgaaaaatatgcaaatgtcTACGAGTCATCTTCTTCAGAAGATGAATTAGAATCGGAGAATGTTataggaactatattaaaaaattattcacaaGTCGGCGGAAAAACAGAGCACTTAGGTCGGACTCAAGCATTTCTTGAAGATGCTTTAGTTTCAGGAGCTGCTACTTGTTTAATATGTATTGGATCTATAAAAAGAAtcgaaaaaatatggAGTTGTATTTCATGTTATTgcttttttcatttatcatgTATTGAACGCTGGTCAAAAGACAGCGTTGTGCAACAAAAAGAATCATTACGTGAACATCCTAATAATTCTATCACTAATATAACGTGGGGTTGTCCAAAATGTCGACAAGAATATAGTCCAGATGAAATTCCGCGagattataaatgtttttgtggAAAAACTATTGATCCACCTTTTCAACCATGGCTTGTACCACATTCTTGCGGCTCTATTTGTTCTAAAAAATTACAGCCTTTATGTGGCCATGAATGTATGCTTTTATGTCATCcagGTCCATGCCCGCCATGTCCAAAAACTGTAAATGTTACTTGTTATTGTAAGGCAAAACCACCGAAATTACAACGATGTTCTAATAAGGATTGGTCCTGCGGGGCACCTTGCAAGAAACTTTTAAGTTGtgataaacatatttgtataaaaccaTGTCATTCCGGTCAATGCCAACCTTGTACTAAACGTAGTATACAAAAATGTCAGTGTGGTGCTGAAGAAGAACTACGAGACTGTGCTTCCCCTATTTGGCAATGCAAGAAAATATGCGGTAAACCATTATCATGTGGATATCATAATTGTCCAGAAATATGTCATAGCAAAGCATGTGGCGATTGTGTTTTGTCTAAACCTCGTACATGTCCATGTGGAAAATCGTTTTATCAATTGGCTTGTGTCGAAGAAACCCCCACATGCGGCGACACTtgtgataaattattagaatgtgGAACTCATTCATGTAACCAAAGATGTCATAAGGATAAATGTGGCACTtgtTTGGAATTAGCGGTGAAAAAATGTCGATGTGGTTTACATGAAAAAGAAGTTCaatgtaaaaaacaatatttatgcgaaacaaaatgtaaaagaCTTAGGGATTGTGATAGACATCCTTGTAATAGAAAGtgTTGTGATGGATTATGTCCGCCTTGTGAAAAGCCCTGCGGCCGCACATTGCCATGCGGACTACACAAATGTAATTCCGTATGTCATCGAGGACCTTGCTACCCGTGTACGCTAACAACATCAGTTCGTTGTCGATGTACTTTAACAGTCCTCACTGTTCCATGCGGTCGACGTAAACGTACTAAACCACCTCGGTGTGTCCGTCCATGTAAAATACCCCCCGACTGTCACCATACCAAGCGTGATCAACACCGATGTCATTTTGGAGATTGTCCACCATGcaaacaaatttgtttaaaaaagttaaaatgtgtGCATACATGCCCTAGTGTTTGCCATTCGGCTGTGATGGTTAAAATCGAAGGGCAGAAAGCATCAATGCCTTGGGAACAAACTGGAGCTCATATGGAACGTAAATGTCTACCTTGTCCTGATTGTAAAGTGCCTATATCGGTTACATGTCTTGGAGAACATGAAACAAGCGAATGGCCTTGTTATCTTGCTAGAGCGGCTTCTTGTCATAGGCCTTGTGGAAGGATATTATCTTGTGGAAATCACAAGTGTGAACTCGAATGTCATATTGTAGAAAATGCTGAAGATGGCAATTCGCTTGGATCAAACTGCGAAAAATGTGAAAATCCATGCGAATTTCCTAGACCTGACGGGTGTCAACATGCATGCCCTCGCGCCTGCCACCCAGATTCTTGTCCTCCTTGTAAACATCTAGTACGGTTAAAATGCCATTGCGGATTGAACCAGCAATATGTGCGCTGTGCAGATTGGACCGCTACAAATGCAGATAAAATACAACTGCAAAGTTGTGGGAATCAATGTCCgaaaaatTTTGAATGTGGACATCGTTGTAAATCAAATTGCCATCCAGGACTCTGTCCAAATCCTGAACAATGTAAAAAGAAAGTCAAGGTGTTTTGTTCCTGtaaacgaattaaaaaagaattttcttgCGAACTCGTTAGAAATAAAACAGCTATTGTTAAATGTGATGAAATTTGCGAACAAAAGAAAGAGGAAGAAAGGAAATTACATGAAATTGAGCtagaaacaaagaaaaaagaagaagATTTGAAAAATGCCAAAGAACTTGAACAATTCCagaaaaaattccaaaataagaaaaaacataAAGATAGAAGAAAAAATCAAGAAATAGAAGAGAAGTcgtttttccaaaaatattggatatttattactgcatttattattgttcTACTTaccatttatttagttatgtaa
- Protein Sequence
- MNSGRGKKSGNVWNTNPSKTSNAVNSSTETKFKEAQQKLQAAVEKYANVYESSSSEDELESENVIGTILKNYSQVGGKTEHLGRTQAFLEDALVSGAATCLICIGSIKRIEKIWSCISCYCFFHLSCIERWSKDSVVQQKESLREHPNNSITNITWGCPKCRQEYSPDEIPRDYKCFCGKTIDPPFQPWLVPHSCGSICSKKLQPLCGHECMLLCHPGPCPPCPKTVNVTCYCKAKPPKLQRCSNKDWSCGAPCKKLLSCDKHICIKPCHSGQCQPCTKRSIQKCQCGAEEELRDCASPIWQCKKICGKPLSCGYHNCPEICHSKACGDCVLSKPRTCPCGKSFYQLACVEETPTCGDTCDKLLECGTHSCNQRCHKDKCGTCLELAVKKCRCGLHEKEVQCKKQYLCETKCKRLRDCDRHPCNRKCCDGLCPPCEKPCGRTLPCGLHKCNSVCHRGPCYPCTLTTSVRCRCTLTVLTVPCGRRKRTKPPRCVRPCKIPPDCHHTKRDQHRCHFGDCPPCKQICLKKLKCVHTCPSVCHSAVMVKIEGQKASMPWEQTGAHMERKCLPCPDCKVPISVTCLGEHETSEWPCYLARAASCHRPCGRILSCGNHKCELECHIVENAEDGNSLGSNCEKCENPCEFPRPDGCQHACPRACHPDSCPPCKHLVRLKCHCGLNQQYVRCADWTATNADKIQLQSCGNQCPKNFECGHRCKSNCHPGLCPNPEQCKKKVKVFCSCKRIKKEFSCELVRNKTAIVKCDEICEQKKEEERKLHEIELETKKKEEDLKNAKELEQFQKKFQNKKKHKDRRKNQEIEEKSFFQKYWIFITAFIIVLLTIYLVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -