Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.6e-07 0.004 17.4 13.3 4 19 16 31 9 31 0.88

2 9 0.71 5.1e+03 -2.1 2.8 1 10 40 49 40 49 0.76

3 9 0.24 1.8e+03 -0.6 2.0 5 10 60 65 60 65 0.93

4 9 5e-05 0.36 11.2 8.1 1 11 71 81 71 82 0.97

5 9 0.19 1.3e+03 -0.2 0.8 4 10 86 92 85 93 0.65

6 9 5.5e-11 3.9e-07 30.2 10.5 1 19 98 116 98 116 0.98

7 9 2.1 1.5e+04 -3.6 0.2 15 16 138 139 137 140 0.47

8 9 0.24 1.7e+03 -0.6 0.4 6 10 145 149 144 150 0.83

9 9 1.1 7.9e+03 -2.7 0.1 3 6 152 155 152 156 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.6e-07	0.004	17.4	13.3	4	19	16	31	9	31	0.88
2	9	0.71	5.1e+03	-2.1	2.8	1	10	40	49	40	49	0.76
3	9	0.24	1.8e+03	-0.6	2.0	5	10	60	65	60	65	0.93
4	9	5e-05	0.36	11.2	8.1	1	11	71	81	71	82	0.97
5	9	0.19	1.3e+03	-0.2	0.8	4	10	86	92	85	93	0.65
6	9	5.5e-11	3.9e-07	30.2	10.5	1	19	98	116	98	116	0.98
7	9	2.1	1.5e+04	-3.6	0.2	15	16	138	139	137	140	0.47
8	9	0.24	1.7e+03	-0.6	0.4	6	10	145	149	144	150	0.83
9	9	1.1	7.9e+03	-2.7	0.1	3	6	152	155	152	156	0.74

Coding Sequence: TTGTGTGGTAAGCGATATCCATTATGTGGTGCTCCATCGTCCCCACATGTTTGTAAATCAAATTGTCATGACGGTGACTGTCCTCCATGTcctttaaatagttttgttcGGTGTAGATGTGGTCATATGAGTTGTGAAGTAGCGTGTTCGAAGTTAAACTCCAGGACAGACGACGCGCGGTGCGAGAAAAAATGTACCAAGaaaCGATCATGCGGGCGTCACAAATGCAATCAATTATGTTGTATTGATATCGATCATGTTTGTCCATTACCATGTAATCATATGTTAACATGTGGATTACATCGATGTGAAAAAACATGCCACAAAGGTCGATGTCTACCATGCTGGAGAATAAGTTTTGAAGAACTTTATTGTGAATGCGGAGCTAGTGTTATTTATCCCCCAGTTCCTTGCGGAACTAAACGTCCACTTTGTAACCGCCCGTGTTCTCGCCAACATGACTGCGAT
Protein Sequence: LCGKRYPLCGAPSSPHVCKSNCHDGDCPPCPLNSFVRCRCGHMSCEVACSKLNSRTDDARCEKKCTKKRSCGRHKCNQLCCIDIDHVCPLPCNHMLTCGLHRCEKTCHKGRCLPCWRISFEELYCECGASVIYPPVPCGTKRPLCNRPCSRQHDCD

Sequence clustering based on sequence similarity using MMseqs2