Pcha007822.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- NEEE01028964.1:21-3480[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0002 0.018 15.7 3.2 1 23 67 90 67 90 0.96 2 13 0.00022 0.02 15.6 1.1 2 23 97 119 96 119 0.96 3 13 0.0047 0.41 11.4 4.8 1 21 304 324 304 325 0.95 4 13 0.0013 0.12 13.2 1.4 2 23 337 359 336 359 0.92 5 13 0.23 20 6.1 0.6 1 23 362 385 362 385 0.95 6 13 0.31 27 5.7 0.6 5 23 393 411 391 411 0.92 7 13 0.094 8.3 7.3 0.6 1 23 415 438 415 438 0.96 8 13 0.11 9.5 7.2 1.1 2 23 445 467 444 467 0.95 9 13 0.083 7.4 7.5 0.9 2 23 476 498 475 498 0.94 10 13 0.17 15 6.5 0.1 3 23 505 526 504 526 0.93 11 13 6.7 5.9e+02 1.5 1.5 3 23 713 734 712 734 0.94 12 13 0.17 15 6.6 0.2 2 23 741 763 740 763 0.94 13 13 0.047 4.1 8.3 0.9 1 23 776 798 776 798 0.97
Sequence Information
- Coding Sequence
- aTGTCTTATTTAGATGAACAATTACCTGTACCAGTATTAgaagtacaaaataaacaacaagaGCAACAACATCTTATTGAGCAGcagcagcaacaacaacaacaattataTACGTGTAGTGAATGTCCAGCAAATCGTTTAAgacaatttttatcatttgcaGAATTTTCAACACATAGAAGAGCTCAACATCAGATATTTCATTGTGATTTGTGTCCAAAGTTTTATGGAAGAAATTCACATTTATGGAAACATGTGAATCGTGTCCATAAAGGACATACAGCAATCACTTGCCAAGAATGTGGAAAAACTAGTGCATCAGAATATCATTTAGCACaacatagaaataaaatgcattcttCAGCTATGCAACTGAATAGTgacaatagaaatattattggtaaatCGAATAAAGTTTCGCAACAAAAATTACAGCAACAGAAACGTAAATATCAACCAAAAATCACCTCAGAAAATAATACTCTGATGAGTATAAGTgagaatttaacaaataaatataataaaaaggtaaatgaaatatcaatatcaaaagtaaaaaaccaaatgattaaaaatgaacaaaatgaaTCAGATGATAATCAATTGATTACAAATGATATTGAAGACGaagatgatttattaaatcagaaatttcaaggatttgattttaaatcagtAAGACAAAGTTTcttaaaacaagaattaatGTCTAAACAACAACGTTTAGTATCTGTGTTAAAGACAAATAATCATTTAGTTGATAAAACTAATGAGAAACAAACAACAAatgaatctattaaaataacaaatagatCTGAATCAATTGAGGAACCGAAAGAAATTGATTCTTCCAGTGATTTatatacaacaataataacaaattatactcCACCAACAAATGAGGGACCTTATAAATGCCCAAAGTGTTTTAAAGGTTTCCATAAAAAGAACTTACTTAAGAAACACAAGAAAAACTGTCGCCCACGTTTACAAAAGGATCTATTAACACGTTGTAAAACATGttcaagaatatttaaagatagaCAAAGTCTGGCAAAGCATTTAGTAAACTATCATTCAGAATATACATGCGAAATATGTAATGTTGCTGTTCAAAGTAAATGTGAAATTGTATCGCATATTCGATTTACCCATCCTAATTCTGAATTGGAGTGTCATTGTGGACAAATATTACGTTCAAAAGTTGATTTAATACGACATAAAGCAGATCACAGGGACTCACACGTTTGCCAATTCTGTGGAGATTCTTTACCAACAAAAATCAAActaaaaatgcatatattgAGTTTACATCGAAAGATTCTTGCACTTAGTTGTGGCATTTGTTTGCGGCTATTTGAATCACAACATGTTTTACGCGCACATGTAAGACACGCACACGCCGATCAATTACGACCATTAACATCATGTACGGTTTGTGGTAAAAATTATGGCTCTAAATGGAAGACATatgatcatttaaataaatcacatgGACGAATATTTAGAGCATGCAAAGCATGTCTTGAAGTATTTGAGAATGAACGAGAATTACAACAACACGTCGATAGAGAACATTCATCTAATACCATCAGTTCTGTATCAAGTGTATCCACTgcacaaaatacaaatactaTTCATACAACTATAAGTTCTTCTAGTTCATTAACAACAGCAACTTctagtaataataatcatttaaaaaatagacaaaaaGTTGGacaaaaatacgaaaaaaagcaaaaatatacttctattaatattacaaatgaaattgatataaatagtgAAACTgaacaaaatgataataacaaAGATGAAGGTAATAATGAGAATAATGATGAAGACGATGTTATTATTGAACAGGATGATGCATTAAATGATACAACTaaagaagtaaatataaaacaaaacggaATACCatccaacaataaaatatcattgttagagaaacgtttattaaataagaaactaaATTCTGAAGAAGAACAACGAGATCGTAATgtaaattcaaattcaaataaaaaaagggaATTAAATGGTACTGAATTAATTGCGAATGTTAACAATAATGATGATATATTACAGAATTCTTCAAAGCGTACTGTTTATGTAAATAGTAATGATCCATCTTTGtgtgaaatatgtttaaaagtatGGCCagcaaaaaaacatttatggcAACATTATATAAGGTGTCATAAACAAACTGCAGCTACGGTTTGtggtatttgtttaaaaacaaatcctAGTTATGCAGCATTACAACGGCATTTAAGACAAACACATCCACGTCTTTTACATGGCTGTGGTTTtggttctaattttatttgtaagattTGTGGAAGATACCATAATGCCAGTTCTAAATTACGATTACATATGGCTATTCACGTTGGCTACAACGGTGACGAGGAAGAAAATGATGCAGATGTATCTGaagttgataataaaatgaaaaataatgaaaaagaaacTTGTTTGGCctcaataaatgataaatcaattgataataatgatgaaaatctcaataaaatgaaaagagaAACAAGTGATGAAGATGAGGATGAAGATGATGAAGAACAACATGTTCCTGTTGATGATCATTCAGATAATGAAGAACACaaaaataaaagaaatttagatCAAGAACTTGGTATTAAACAAGAAAGTGATGATGATAACGAAATCGATGACGATGAAGATGATGATGAAGACGATAATGATAATGATGATGATGGCGATGATGAAGAAGAGGaggatgatgatgatgatgatgaagaTGAAGATGGTGATGATAATGACAATGGCAATAATGAAATTGATAGTAGCGatgaaagttttaataatatacaagaaaAAGACACGAAGGAAACATTCGaaagtaaacaattattaaaaaaagaaataatagacatcgattatgaaaatattataaattacgaaAGTTTAATTGAAGAAGTAGAAGCAACTGACGATGAAAACGATGTTCATTCAAATGATGATCATCATTTTGTTAATGATGAAACAACACGAACTACAGAAAATGAATTGGAacaagaaatgttaaaaaatatgattggtGAAAGTCGCAGCGTAAAATTATCACGAATTAAATTGGAACATAGTGATGAGGATTGTGATAATAATGCCAGTTCTATTCCAGCTGCAAATCAAGATGATTTAGACTACGATGATGCTAATGATGCTGAAGTAAATAATGTCATTATTGCACAAGTACAAGTTCATGAGGAAATTGAGGAAGATGATGTTACTACTTATGAAGTTCAGTTAATTGATGAAAGTGCTGGTAATGaagatattttagaatatgttaaacatgaaattatctataacgataatgaagaaataaaagtt
- Protein Sequence
- MSYLDEQLPVPVLEVQNKQQEQQHLIEQQQQQQQQLYTCSECPANRLRQFLSFAEFSTHRRAQHQIFHCDLCPKFYGRNSHLWKHVNRVHKGHTAITCQECGKTSASEYHLAQHRNKMHSSAMQLNSDNRNIIGKSNKVSQQKLQQQKRKYQPKITSENNTLMSISENLTNKYNKKVNEISISKVKNQMIKNEQNESDDNQLITNDIEDEDDLLNQKFQGFDFKSVRQSFLKQELMSKQQRLVSVLKTNNHLVDKTNEKQTTNESIKITNRSESIEEPKEIDSSSDLYTTIITNYTPPTNEGPYKCPKCFKGFHKKNLLKKHKKNCRPRLQKDLLTRCKTCSRIFKDRQSLAKHLVNYHSEYTCEICNVAVQSKCEIVSHIRFTHPNSELECHCGQILRSKVDLIRHKADHRDSHVCQFCGDSLPTKIKLKMHILSLHRKILALSCGICLRLFESQHVLRAHVRHAHADQLRPLTSCTVCGKNYGSKWKTYDHLNKSHGRIFRACKACLEVFENERELQQHVDREHSSNTISSVSSVSTAQNTNTIHTTISSSSSLTTATSSNNNHLKNRQKVGQKYEKKQKYTSINITNEIDINSETEQNDNNKDEGNNENNDEDDVIIEQDDALNDTTKEVNIKQNGIPSNNKISLLEKRLLNKKLNSEEEQRDRNVNSNSNKKRELNGTELIANVNNNDDILQNSSKRTVYVNSNDPSLCEICLKVWPAKKHLWQHYIRCHKQTAATVCGICLKTNPSYAALQRHLRQTHPRLLHGCGFGSNFICKICGRYHNASSKLRLHMAIHVGYNGDEEENDADVSEVDNKMKNNEKETCLASINDKSIDNNDENLNKMKRETSDEDEDEDDEEQHVPVDDHSDNEEHKNKRNLDQELGIKQESDDDNEIDDDEDDDEDDNDNDDDGDDEEEEDDDDDDEDEDGDDNDNGNNEIDSSDESFNNIQEKDTKETFESKQLLKKEIIDIDYENIINYESLIEEVEATDDENDVHSNDDHHFVNDETTRTTENELEQEMLKNMIGESRSVKLSRIKLEHSDEDCDNNASSIPAANQDDLDYDDANDAEVNNVIIAQVQVHEEIEEDDVTTYEVQLIDESAGNEDILEYVKHEIIYNDNEEIKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -