Pcha017642.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- HINFP
- Assembly
- GCA_002278615.1
- Location
- NEEE01001201.1:43621-46387[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.4 4.7e+02 1.8 0.4 1 23 62 86 57 86 0.90 2 10 0.31 28 5.7 0.3 6 23 106 123 99 123 0.92 3 10 4.1 3.6e+02 2.2 0.6 1 21 159 181 159 183 0.91 4 10 0.00071 0.063 14.0 0.4 2 23 197 220 196 220 0.95 5 10 0.011 0.94 10.3 0.5 2 21 227 246 227 247 0.93 6 10 1.1e-05 0.00093 19.8 0.8 1 23 256 278 256 278 0.99 7 10 1.8e-05 0.0015 19.1 4.8 1 23 282 305 282 305 0.98 8 10 5.2e-05 0.0046 17.6 1.1 1 23 311 333 311 333 0.99 9 10 0.0018 0.16 12.7 3.9 2 23 340 361 339 361 0.97 10 10 0.0028 0.25 12.1 2.5 1 23 369 392 369 392 0.95
Sequence Information
- Coding Sequence
- atgCAGCGTAAAAATCGTCTTGCAGTTTTTGAACATGTACCCCCAAAAGAGCGCCCTTCAACCACAATCAAACCTGATGCCAAACCGTTTAAAAGATTACGTAGCCCAGAACCAACAATTGaagatcaatcaaaaacaaaacgtCGACGCAAATTAGTAAATGTTTCAGACTGTGGATACGAGTTTAATTGTGAAATAGGAACTTGTAGTTATattggtaataaatataacgaaTTCCTAAAACATAtagaattacatttaaatgaaattgagtATTGCCCTGAtgAAATTGGTTATGAATGTATTTGGAGTAGTTGCGAAGAGTCATTTGAtacatttaattcatttcGTCAGCATGTTTTATACCATGGTTATTATCATAAGCTTCGACAAGTTGCTTTTTCGTTACTTGAAACTACAAAATTACCTGATTGCAATGAACCAGTAATTAAATTACCGGCTTTGCCACCTTATTATGTATGCGAGTGGGATAATTGTGGTACAATTGTAGCTACGTATCAGAAATTCTTAGATCATGTTAAATGCCATGTTAATGGCACCCCAAAAAGTGAGAAATACAATTGTATTAAATGCGAATGGActgGTTGTGCTTATACGTTTAATAAGCAATATAAATTAGCCGATCATATGAAAAGTCATACTAAGGAGAAATCTGCAGTTTGTCCGACTTGTAATGTAGCTTTTTCAAGTCGGACTAAATTTTATGATCATAGAAAACGACAATTAGCTACAGATTtacaaGGATATCAGTGTTCGCAATGTTCGAAATTATTTGCGAGTGAAAGATTACTTAGAGATCATATGCGTATACATATTAATCATTATAAGTGTCATCTTTGTGATATGACTTGTACAAAACCGTCGAGCTTAGCTAAACATATACGTTATCGTCATTTACCGGACCGGATGTTTAAATGTGAAATTTGCAGTCATTCAACAATTACCCAACAAGACTTAAATCAACATATAGCAACGCACAGCGCTGATAATAAAATGGAATGTCCGTATTGTAACTATAAGTGTCgctcaaaatttacaattaataaacatattaagcAACATGAGGGCACCTGGAGTTACAATTACGCATGCCATTGTTGTGATAAAAGATTTGCGCGAGGTGCGTTacttacaaaacatttaattaaaatacatggtTTTCATTGGCCTTCAGGTCATTCCAGATTTTCgTATAAACAGAATAATCGGACTGGCTTTTTCCATTTACAAGTAGTTCGTTACGAAAGTTTAGAAGTAACGCAAGAAATGATGGATGGAAATATCCCGTATCAATTTGCATCGGgacaaaattgtaaattcgAATGTGAGCAACTACCAAATAAACCTTTAGCCTATATCTTAAAAGTAAGCGATGATACAAATCAACATCCAAACCTATCTTATAAACAACCACCTCAAGAAAcaaataccaaaaataaacGACCGGTTGACGATGTTGAAATAACTATCGAAGAGTTAGATTTCGaaggaaatattattaaaatcgaaAAAGTTGAATcgcatattttgtattcatcgCAAATATCACCTGGcgatgttaaaattattgaataa
- Protein Sequence
- MQRKNRLAVFEHVPPKERPSTTIKPDAKPFKRLRSPEPTIEDQSKTKRRRKLVNVSDCGYEFNCEIGTCSYIGNKYNEFLKHIELHLNEIEYCPDEIGYECIWSSCEESFDTFNSFRQHVLYHGYYHKLRQVAFSLLETTKLPDCNEPVIKLPALPPYYVCEWDNCGTIVATYQKFLDHVKCHVNGTPKSEKYNCIKCEWTGCAYTFNKQYKLADHMKSHTKEKSAVCPTCNVAFSSRTKFYDHRKRQLATDLQGYQCSQCSKLFASERLLRDHMRIHINHYKCHLCDMTCTKPSSLAKHIRYRHLPDRMFKCEICSHSTITQQDLNQHIATHSADNKMECPYCNYKCRSKFTINKHIKQHEGTWSYNYACHCCDKRFARGALLTKHLIKIHGFHWPSGHSRFSYKQNNRTGFFHLQVVRYESLEVTQEMMDGNIPYQFASGQNCKFECEQLPNKPLAYILKVSDDTNQHPNLSYKQPPQETNTKNKRPVDDVEITIEELDFEGNIIKIEKVESHILYSSQISPGDVKIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -