Basic Information

Insect: Pogonus chalceus
Gene Symbol: L
Assembly: GCA_002278615.1
Location: CM008231.1:4720959-4738165[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.9e-05 0.0017 18.9 0.5 1 23 86 108 86 108 0.96

2 20 0.22 20 6.2 6.2 1 23 114 136 114 136 0.98

3 20 3.7e-06 0.00033 21.2 2.5 1 23 142 164 142 164 0.99

4 20 8.8e-06 0.00077 20.0 0.5 1 23 170 192 170 192 0.99

5 20 0.00058 0.051 14.3 0.2 1 23 231 254 231 254 0.95

6 20 0.037 3.3 8.6 2.0 1 23 354 377 354 377 0.97

7 20 0.00014 0.012 16.3 1.0 1 23 396 419 396 419 0.96

8 20 0.014 1.3 9.9 0.2 3 23 482 502 481 502 0.98

9 20 0.00071 0.062 14.0 0.3 3 23 568 589 566 589 0.93

10 20 0.0081 0.71 10.7 0.4 1 23 594 617 594 617 0.93

11 20 0.03 2.7 8.9 0.2 2 23 668 689 668 689 0.96

12 20 0.0026 0.23 12.2 0.1 1 23 693 716 693 716 0.98

13 20 3.4 3e+02 2.4 0.6 3 23 777 799 776 800 0.85

14 20 0.0025 0.22 12.3 4.6 2 23 813 834 812 834 0.96

15 20 0.019 1.7 9.5 0.7 1 23 844 866 844 866 0.98

16 20 0.00047 0.041 14.6 1.1 1 23 986 1009 986 1010 0.97

17 20 3.6 3.2e+02 2.4 0.4 1 23 1013 1035 1013 1035 0.94

18 20 0.025 2.2 9.2 0.9 2 23 1044 1065 1044 1065 0.95

19 20 0.06 5.3 8.0 0.0 1 23 1073 1096 1073 1096 0.92

20 20 3.1 2.7e+02 2.6 1.9 1 23 1103 1125 1103 1125 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.9e-05	0.0017	18.9	0.5	1	23	86	108	86	108	0.96
2	20	0.22	20	6.2	6.2	1	23	114	136	114	136	0.98
3	20	3.7e-06	0.00033	21.2	2.5	1	23	142	164	142	164	0.99
4	20	8.8e-06	0.00077	20.0	0.5	1	23	170	192	170	192	0.99
5	20	0.00058	0.051	14.3	0.2	1	23	231	254	231	254	0.95
6	20	0.037	3.3	8.6	2.0	1	23	354	377	354	377	0.97
7	20	0.00014	0.012	16.3	1.0	1	23	396	419	396	419	0.96
8	20	0.014	1.3	9.9	0.2	3	23	482	502	481	502	0.98
9	20	0.00071	0.062	14.0	0.3	3	23	568	589	566	589	0.93
10	20	0.0081	0.71	10.7	0.4	1	23	594	617	594	617	0.93
11	20	0.03	2.7	8.9	0.2	2	23	668	689	668	689	0.96
12	20	0.0026	0.23	12.2	0.1	1	23	693	716	693	716	0.98
13	20	3.4	3e+02	2.4	0.6	3	23	777	799	776	800	0.85
14	20	0.0025	0.22	12.3	4.6	2	23	813	834	812	834	0.96
15	20	0.019	1.7	9.5	0.7	1	23	844	866	844	866	0.98
16	20	0.00047	0.041	14.6	1.1	1	23	986	1009	986	1010	0.97
17	20	3.6	3.2e+02	2.4	0.4	1	23	1013	1035	1013	1035	0.94
18	20	0.025	2.2	9.2	0.9	2	23	1044	1065	1044	1065	0.95
19	20	0.06	5.3	8.0	0.0	1	23	1073	1096	1073	1096	0.92
20	20	3.1	2.7e+02	2.6	1.9	1	23	1103	1125	1103	1125	0.91

Sequence Information

Coding Sequence: ATGTTGTTCAAAGGAAATAGTAGCCGCCTTGAGCTTTTGATTGAAAAAATACAATCCAACAAAGAAAATCACGATACATCTACTAGCGGAATTAAAGACGCTTTGGGAACAGACGAAGGTAGTAGCTGGCGCTCAGAGACGCCGGACGACCCAACACAATCCCCAGCACCATCGTCTTGTGCGACGCCAAATTCATCAACGGAGCTACCGGACTCTGAGCTGAGTTACACCGTGGGAACCACGGAAGCTACACCCTACGCCTGCCCATTCTGCGAGAAGGCATTCCCCCGACTCAGTTACCTTAAAAAGCATGAACAGAATCATTCGGAACATATGCCATTCAAATGTGAATTTTGCACTAGACTTTTTAAACACAAAAGATCACGTGATCGGCATATTAAACTACATACGGGAGACAGGAAATATAGATGCAACTTGTGTGATTCTGCGTTCTCCAGAAGcgatcatttaaaaatccatTTAAAAACTCATGATACTCAAAAACCGTTTCAATGTACAACTTGTAATCGCGGTTATAATACAGCGGCAGCGCTTACTTCTCATATGCAGACTCATAAGCGTCAAGCAGAAACACCTTCAAATTCTGCTCTTGCTGTTAATAACAATACTAACAGCGGGCGATCTACTGCAAATATAACTGAAGAAAGTGCTCCCAGCCCTGCGTTTGAATTTCGGTGCGTTCATTGCGGGGAAGTTTTACAAAGCCGCGAAAATCTTGagCAACATATATTACTAGCACATAGAAAACCTGAACAAATATCTGAATCTTCTGTGAGTAACACCTTACCAGCAACAATTCCAGAACATTTGTTACCAGCTCTAGCGACAAATTTAACTTGTATGTACTGCACAAAAGATAGTTTTACTACTATGGAACAATTGCAGTTTCATGTACAAGCCATGCATGGAGCAATTGCGAATGGTAACTTTTCAATCTTGCAAGAACAAGTCGAAGTTCAAAGAGCTTTATTAAGTAAACCACCACCGTTGATTCCAGTGGGCGATGTTTCAGTAAATTTTTCAGGAAATCCTCTTCCTTATCGCTGTGAACTTTGCATGATGCGATTCATATCTTTAAGTCGCTTGCAAAGGCATTATTTCACTCAACATCGAAATCCGAATAATACCCCAACAGAGCAACTTTCATTCCAAATGAATTATCCATTTCCATGCAGTGTCTGTGGTTTCCATTTTTCAAACCCAAAAGAATTAGCGCaacattttcaaaaagttCATCGCACATCAACCGATTCAAGTGACTTAAAAGCAACTGATCTTAGTAGGAAAACTCCAAGAAGTACCTCTTCTGAAGATAGAACCCCAAAACGACAATGTACTGAAGAATCAACCTCACGCGATGAATTGAGCACACCGAATCCAGCAGCTCAATCTACTCAATATAATTATCCGGggatattattatgcaatcaATGTGAAGCCGCGTTTCCTAATTTTGAGTCTTTCCGGGAACATCAAAATATTCACTTAGCTCAGCAGGATAGTGGAATTGCATCATTTAtgcaacaaaatcaaaatattcttgCAGCTATACAACAAGAAAGTGTACAATTACTTTCGAATCCATGTATTTGCAGAATATGTAACCGCGAATTTCAAGATGTCCCAACTTGCGagcaacatattttttcacattttgtCGCAACTGCTACTGAATATGGTTGCCAAAGTTGCCGAAAAACTTTCCCAAAACCAGATGAATTGCAAAAGCATTTAATGGACATCCATGCACTTCATTTATATAGATGTTCATTATGCAAAGAAGTTTTTGATTCCAAAGTTCAAATTCAAGTACATTTTGCTGTAAAACACAGCAATGAATGTAAAATGTTTCGTTGCACAGCTTGCCCGAACGCCGCTTCAATTTTTCATTCAGAAATTGAATTTGGAATGCATATTCGTAATATTCATAATGTACATGGTATGATTGCCACAACTTTTAGACCGCAATCACGAACTGCACAATGCACTTATTGTAATCAAGCTTTTGCGACTGAGCTTGAATTGCAGTTCCATCTAGCAACTCATACCAAACAGTTTCGTTGTCCAGTTTGTGCTGAAGTTTTCCAGGTTGAATACCTTCTAGATAAGCATATTCAAACCTTCCACAATAATACACAGgctGTAAATGGCGATGGTGAAAACAGCCACGATGGCGATAAATCATCTAAGAAATCTTCATCAAATTCACCAATTGTTAAAACTCATACTCCACCCGTACGCACATCACAAAAATCCAATGACAATAACAATGTTAAAAAACAACATGAACTATCTGAAATTAATAACTGTGATATCTGCGAACGTAATGATTTTACAAATGAAACCGAATTGGTAGCACATCGTAAATTAGTTCATCACATTAGAAACAGCTCAAAAAATGGAGCAGTTAGCTTGCATTGCGCATATTGCAATGAAAATTGCAAAACACGTACTGAGTTAGAAAATCATATGAAAAGCCATTCGCAAAGTAGCGGCGTATCTGGTAAACACAAATGTAATATTTGTGATGAACTATGTCCATCGCCAATTTTACTTGCTGAACATAAATTGACTCATTGCAAAGTCATTTCTGGCAATTGTTGCACTCAATGCAAAGCAGCAATAAACACGGAGGAACAATTTTATTCACATTTAGTTCAACATAGCAACAACAATAACGGTAACAGCCAAAAGATAAAATCCCAAATTGCGCTGCCAAGTCCATGCGTTATTTGTCGTCAAACATTAATATCCGAAGTTGAAGTTCGAATTCATTCGCAATTTCATTTACGCAATACAATGCAACAACCACGAGATATCCCGTGctcaaattgttttaaactagTGGCCGTCCAAAATTTATTGACTACTAGTGGAAACTATTTATGCCCTGACTGTTATTCAGTACAAAGTGGACAGCAGCAACTTAATATATATCGTTGCTCTGAATGTCAATTGTACTTTGAAAGTAATTCGGCGTTAGATCAGCACATCAAAAGCGCCCATCATAATACATACACGTGTATTAAATGCGAGAGTACCTTTGATAATGAAAACGATGTGAAAATTCATGTAACTAATCATTTAATGGAAGAGGGTGAAAACAATGAATGCCATCTTTGTCGCAGATTGTTCTCAACTCCATTGAAACtgcaaatacatttaattgagCATAATTTCGCTGGTAGCAGTGCATTTACTTGTTATTTGTGTTCAGCCGTATTTACTGGTGCACAAGGCTTACTTACTCATATGGTGGCTGAACATGGCCTCGGTGCTAGACCTTACGATTGCCCCCAGTGCAAATCGAAATTTTTCTTCCGTTCTGAAGTTGATAATCATAGCTACAGCCATTTAAGTGGCGGTTCACGTTTAACTGAAGCGGACATTGCTTTGATGAGTCCAAAAGCATATTACGTATCTTCAATTGGAAAATGTGAACCAACTAAAAATGGCGATACTTCAAAATCGGAAAAGGAAactaagaaaaagaaaaaatcttcCAAAGCTAATAAAGAACCTACcgataatgaaaatatgttacaaaatgcGGAAAATGGGGAAAATGATGATGGTTTTGATGAAAAGTTTGTTGTTAAAGAAGAACCAGATTATGATGAATCCATAAAAAATATGGAATATATTGAAGTTGTATCTCctgataataatgttaaaaaagaaattgatgATTCCTTTAAAGGAAATAAAACCAACACAGACTCCAAAACTGAAGTATATAATGTAAACTTAATATCAGCAAagtcaattgtttataaaaacgtGATACTTTCTGCTAAAAAAACGTCAAAATTGCGATCAATTCAATGCTCGTATTGTTTATGGTCATCAGTATTAAccgagaaaaatatttttaaaaataagaataaaaaaaacacaacCTCCAgtgatttacaaattaaaattgaagatgCATTTATCcttatattagatttaaaaatcaaaatttcaacaGATAATCAAATAGACGATATATTAGATGAAAATAGCGAAGCTTTGGCGTTGTTTATTCAcacaaataaactaatatatacgATCTCAGATTTCGTTGCTTTTAGAATTATAAAGTCCATGAAGGCTGCGAAACTCCAACAGCAAACTACTAACACATCGGTAGAATTACGAAAAAATCATGTAAGTTGTGGACTCGATGACGAACTTgacaaatgtaaaaaatgtcgaaaaattaatatccgtAATAAATTCTACACGAGAAAATTTTGTTCTGCTGCTTGTGCGAAAAATCGAAATGATAAACAGAAATTGAAAtggaatcaaattaaaaaatatataggaaatattttttcgagtGATGAAACAAGTGAAATAAAAGGCAACTCGAAAACTGCATCTGTTTTGCTAAATGGCAATCCAATCCAGTGGACTATTGAAGAAGTCCAAGAATTCATATCAAATATTCCTGGATGTTCCAAGTACGCAAGAAATTTTGCGTATCAACACATTGATGGCAAGGCATTAATGTTGTTAAACTtagatgatttaattaatttaatgttcgTTCGATTGGGTCctgctttaaaaattttgacccaaattaatataagaaaaaaatttaaaaaccaaagaatttaa
Protein Sequence: MLFKGNSSRLELLIEKIQSNKENHDTSTSGIKDALGTDEGSSWRSETPDDPTQSPAPSSCATPNSSTELPDSELSYTVGTTEATPYACPFCEKAFPRLSYLKKHEQNHSEHMPFKCEFCTRLFKHKRSRDRHIKLHTGDRKYRCNLCDSAFSRSDHLKIHLKTHDTQKPFQCTTCNRGYNTAAALTSHMQTHKRQAETPSNSALAVNNNTNSGRSTANITEESAPSPAFEFRCVHCGEVLQSRENLEQHILLAHRKPEQISESSVSNTLPATIPEHLLPALATNLTCMYCTKDSFTTMEQLQFHVQAMHGAIANGNFSILQEQVEVQRALLSKPPPLIPVGDVSVNFSGNPLPYRCELCMMRFISLSRLQRHYFTQHRNPNNTPTEQLSFQMNYPFPCSVCGFHFSNPKELAQHFQKVHRTSTDSSDLKATDLSRKTPRSTSSEDRTPKRQCTEESTSRDELSTPNPAAQSTQYNYPGILLCNQCEAAFPNFESFREHQNIHLAQQDSGIASFMQQNQNILAAIQQESVQLLSNPCICRICNREFQDVPTCEQHIFSHFVATATEYGCQSCRKTFPKPDELQKHLMDIHALHLYRCSLCKEVFDSKVQIQVHFAVKHSNECKMFRCTACPNAASIFHSEIEFGMHIRNIHNVHGMIATTFRPQSRTAQCTYCNQAFATELELQFHLATHTKQFRCPVCAEVFQVEYLLDKHIQTFHNNTQAVNGDGENSHDGDKSSKKSSSNSPIVKTHTPPVRTSQKSNDNNNVKKQHELSEINNCDICERNDFTNETELVAHRKLVHHIRNSSKNGAVSLHCAYCNENCKTRTELENHMKSHSQSSGVSGKHKCNICDELCPSPILLAEHKLTHCKVISGNCCTQCKAAINTEEQFYSHLVQHSNNNNGNSQKIKSQIALPSPCVICRQTLISEVEVRIHSQFHLRNTMQQPRDIPCSNCFKLVAVQNLLTTSGNYLCPDCYSVQSGQQQLNIYRCSECQLYFESNSALDQHIKSAHHNTYTCIKCESTFDNENDVKIHVTNHLMEEGENNECHLCRRLFSTPLKLQIHLIEHNFAGSSAFTCYLCSAVFTGAQGLLTHMVAEHGLGARPYDCPQCKSKFFFRSEVDNHSYSHLSGGSRLTEADIALMSPKAYYVSSIGKCEPTKNGDTSKSEKETKKKKKSSKANKEPTDNENMLQNAENGENDDGFDEKFVVKEEPDYDESIKNMEYIEVVSPDNNVKKEIDDSFKGNKTNTDSKTEVYNVNLISAKSIVYKNVILSAKKTSKLRSIQCSYCLWSSVLTEKNIFKNKNKKNTTSSDLQIKIEDAFILILDLKIKISTDNQIDDILDENSEALALFIHTNKLIYTISDFVAFRIIKSMKAAKLQQQTTNTSVELRKNHVSCGLDDELDKCKKCRKINIRNKFYTRKFCSAACAKNRNDKQKLKWNQIKKYIGNIFSSDETSEIKGNSKTASVLLNGNPIQWTIEEVQEFISNIPGCSKYARNFAYQHIDGKALMLLNLDDLINLMFVRLGPALKILTQINIRKKFKNQRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -