Pcha002992.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- CM008235.1:128989-132679[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.3 4.6e+02 1.8 0.1 1 23 392 415 392 415 0.90 2 14 4.8e-05 0.0042 17.7 2.8 1 21 421 441 421 442 0.94 3 14 2e-05 0.0018 18.9 1.9 1 23 457 479 457 480 0.96 4 14 0.00089 0.079 13.7 0.7 2 23 482 503 481 503 0.97 5 14 6e-05 0.0053 17.4 1.4 1 23 509 531 509 531 0.98 6 14 0.047 4.1 8.3 0.3 1 23 542 565 542 565 0.92 7 14 0.0008 0.071 13.9 3.6 1 21 580 600 580 602 0.95 8 14 1.8 1.6e+02 3.3 3.3 1 20 608 627 608 630 0.79 9 14 0.012 1.1 10.2 5.3 1 23 648 671 648 671 0.94 10 14 0.013 1.1 10.1 0.3 1 23 678 701 678 701 0.98 11 14 0.023 2 9.3 1.2 2 23 707 729 706 729 0.96 12 14 0.031 2.8 8.9 0.4 1 23 736 758 736 758 0.97 13 14 0.0037 0.33 11.8 0.0 2 23 765 786 764 786 0.98 14 14 3.2e-06 0.00028 21.4 1.2 1 23 815 837 815 837 0.99
Sequence Information
- Coding Sequence
- ATGgcacaaaatatgaaaatatcaataatatcacAAACCGGTGAAAATATTCTAACAACAATCGAAAGCAATGAAACTTTTTACGAATTCCAACAAAatctatcaaataattttaatgttcaaGTCTGTGtaaacgattttaaaatattcgacccgaatttaacagaaaacgataatttttttaattgtttaaaagcgCAAATAAATGagGAATTATTAAATCTGGATGATCCACCGatattacaaatacaattaatacaaCCATCACttgaacaacaacaacaacaacctcTTGAACAGCTTGAACAACAACAACCTCTAGAACAACTTCAGCAACAACCAGAACAACCGCATATAGATGAAATTAAACCTGAAACATGTAGCACACCGTTTAGTATAACAGAAAACAGttctgatattaaaaatattgaaccatcattaataataaatccagAAACacaagaaataacaaaaattttacaagataatatatttgaaacaccTAATAAACCAGAAGAAACATTTAACGATATTATACAAACGCGATCATCCCGAAAAAAGCGTGAAATCCCACCGGAAGTACcaccaacaacaacaacaaccccAACACAAACTAAAGatgataacaattataaatacaacgaTATCGAATCAAAATTACGCGAAATTCATGATTTTCGTGAGGAATTAATAACAGATTTTTGTCGTTTATGTtcgaaaacaatattaaacaaaaaaatacaaatttttacggAAAATTATAGCTTagatgaacaaataaatagttgtttaccgattaaaataacaaaagaagatGGTTTGCCTCAACAATTATGCGAATCATGTATGAAACGCTTACGAAAACATTACGATTTTATGAAACAAGTTAAAGATGCTGatcaattcttaaaattaaaatttccggTGTTAAACCCAGAGAATAACACTTCAACGGTTGCTGATTTTTTAAACGAGTTCTTAGCTACGGAGAAAATCCAACCGAAGCAGGAAACTCCTCCGGATGACACTATGGACGTGGAATACTTAGATGTTGAAGAAATCGAAGATGTTTCAAACACCGAAAACTTCCATTGTCGCATTTGCgatttaataatagataatttaaaagatgcGTTAGTCCATAGTGCACGAGatcactttattaataatttatacgcGTGTGTTTTTTGTGAATACGGGTTCGAAACAACAATGATTCTATCCGAACATATTCAAAACGaacataaaaactttaataaacatCAATGTAAAGTTTGCAATAAACGTTTTCCTTACCAAAGTCTATTACAAAAAcatgtttgtataaataatcaattcaaacgattttttgataactttaaatataaatatcgatGCAGTATTTGtggtaaaatatttgactCAAAAATTACGTTATTATCGCATAAGAAAATACATCATAATAAATGcaacatttgtaataaaacgtTCGCTGATAGgagaattttaaaagaacatgAAATAACACATATGAAAACAAAGCCGTATGTGTGTCACATATgtggtaaaaatttaaatcgtttAAGCCGTTTACGGACGCATTTAATATCTCATGAACAAaatgaattgattttaaataatgtacataattgtaatttatgcgATGAAGCATTTGATTCTGTAGAAAATGCTACAAGTCATGAGAATAATGTACATGATGGAAAGAAATGCGtacatattattgaaattgataaaGTTTTTCGGTGTGAATTTTGTGATAAGAATTTTAGCGTTGCTGATACTTTGAACACACATCGGAGATGTCACAATGGACCAAAACCTTACGTTTGTCATATTTGTAATTCGGAGTTTTCTTCATATTCTAgatgtgCAACACATAAAGTAATCCACGGAATATACAGTGATAAtcctaataaaacatatttcccAGTTGCAAGGCATTTTTTATGCGAACATTGTAACAAATCCTATTTACATTGGAGTCACTTAGgaatacacatgaaattaaaacattcaaaCACGCAAAGTATCTACCGATGTTTAGATTGTAATTTAGAATTTCCAAATAGCTGGGGAATTGCATATCACAGAAAAACTAAACACTCCGAAGAGCCTATAAAATGTACTGAGTGCCACGTTTCTGTTGATAACTACGAGAAATTAAAAGAGCATCGTTTAAAAgaacattcaaataaaaaatataATTACCAATGTATTAAGTGTAGTAAGATCTTTCTAACGCAAGAAATGTTAgaagaacatttaaaaatccatcaaaatattaaagaaaataaatgccCGTATTGTCCTAGCAGTTTTATTGAAGTTACCGCGTTAGCAGCGCATTTAAAAATCCATCGAATTAAGAAAAgcgtaacaaataataaaactacagCAGTTAAACCAGATTCCCAACCCCCAGAAGAAGTTTCAGACCGTCCGTACACCTGCGAAGAATGTGGTTTATCATTCCGTAAACCATTCACCTTAAAATCACATCTCCAAAAGCATTACCAACCCCAAGAGGAAAGTAATTTCGTGTTGATGGTCGATATGAAAGAGGATCAAAATAAACCAGACGAAATAAACCAATCAATTATTGAACCAAGTGTTCCTAAAATCGATGAGACGATATCAAACTCTGAAATGactgaaaattttatcgaTTTAGGAAATGGGAATTATATCCGCCTGCAAGGCGGAAATACGTTTAATATCGACGGAAAGGAATATATATTAGTACCGGAAACGGATAAAACTATAGAAGATAatctacaaaatattgaaGTACCGACGTATGATCAACCAATGCAATTAAACCcgaatttattagataataatCCTGAATTTAATAACGCTATTATGTACGTCCAACAGGAGAATTCATACATAATGAATCAAaatgatgattttatttataataatgatatgttGCGAACGGTTACACATGAGGGTACAACATATGTCCTAGGAAATGATATGTTATTAGAGAACaatgttactttttaa
- Protein Sequence
- MAQNMKISIISQTGENILTTIESNETFYEFQQNLSNNFNVQVCVNDFKIFDPNLTENDNFFNCLKAQINEELLNLDDPPILQIQLIQPSLEQQQQQPLEQLEQQQPLEQLQQQPEQPHIDEIKPETCSTPFSITENSSDIKNIEPSLIINPETQEITKILQDNIFETPNKPEETFNDIIQTRSSRKKREIPPEVPPTTTTTPTQTKDDNNYKYNDIESKLREIHDFREELITDFCRLCSKTILNKKIQIFTENYSLDEQINSCLPIKITKEDGLPQQLCESCMKRLRKHYDFMKQVKDADQFLKLKFPVLNPENNTSTVADFLNEFLATEKIQPKQETPPDDTMDVEYLDVEEIEDVSNTENFHCRICDLIIDNLKDALVHSARDHFINNLYACVFCEYGFETTMILSEHIQNEHKNFNKHQCKVCNKRFPYQSLLQKHVCINNQFKRFFDNFKYKYRCSICGKIFDSKITLLSHKKIHHNKCNICNKTFADRRILKEHEITHMKTKPYVCHICGKNLNRLSRLRTHLISHEQNELILNNVHNCNLCDEAFDSVENATSHENNVHDGKKCVHIIEIDKVFRCEFCDKNFSVADTLNTHRRCHNGPKPYVCHICNSEFSSYSRCATHKVIHGIYSDNPNKTYFPVARHFLCEHCNKSYLHWSHLGIHMKLKHSNTQSIYRCLDCNLEFPNSWGIAYHRKTKHSEEPIKCTECHVSVDNYEKLKEHRLKEHSNKKYNYQCIKCSKIFLTQEMLEEHLKIHQNIKENKCPYCPSSFIEVTALAAHLKIHRIKKSVTNNKTTAVKPDSQPPEEVSDRPYTCEECGLSFRKPFTLKSHLQKHYQPQEESNFVLMVDMKEDQNKPDEINQSIIEPSVPKIDETISNSEMTENFIDLGNGNYIRLQGGNTFNIDGKEYILVPETDKTIEDNLQNIEVPTYDQPMQLNPNLLDNNPEFNNAIMYVQQENSYIMNQNDDFIYNNDMLRTVTHEGTTYVLGNDMLLENNVTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -