Pcha018736.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- CM008234.1:1994825-2003096[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.95 10.3 0.4 3 23 442 463 441 463 0.94 2 12 0.00035 0.031 15.0 2.2 2 23 548 569 547 569 0.97 3 12 0.088 7.8 7.4 0.1 2 23 573 594 572 594 0.96 4 12 0.051 4.5 8.2 2.0 3 23 648 668 647 668 0.97 5 12 0.0035 0.31 11.9 4.2 1 23 674 696 674 696 0.98 6 12 4.3e-06 0.00038 21.0 3.8 1 23 702 724 702 724 0.98 7 12 0.00014 0.013 16.2 6.0 1 23 730 752 730 752 0.97 8 12 0.0017 0.15 12.8 1.2 1 23 760 782 760 782 0.96 9 12 1.7e-05 0.0015 19.1 2.0 1 23 789 811 789 811 0.98 10 12 0.00034 0.03 15.0 0.5 2 23 818 839 817 839 0.96 11 12 0.00088 0.078 13.7 3.9 1 23 845 867 845 867 0.98 12 12 1.7e-05 0.0015 19.2 1.2 1 23 873 895 873 895 0.98
Sequence Information
- Coding Sequence
- atgGATCATTCATATATagAATCTGGACCTGTTCATGAAAGTACGAGATATATAGAAGACAGTGatgatgaaaataataaagaaaataccaTTACGccttccaaaataaataatacaccaCCTACAGCTACAAACCAAACTgaagaaaattcaaataagttACCTACAACGAATATtggaattttAAGACAAACGTTCAACACAACATGTTCAATCCCGCATTGTTTAAACTTTAGAAGAGAATTAATTCATGTTCATTCATTTCCTTCGAATCCCATGTTATGCAGAAAGTGGGTTGATGCATTAGGATTACGGAAACCAGTAAaagaatatatgaaaatatgttcggaccattttaaagaaaatgatttTGTACCAGgaagtttttataaagaattgaaaaaaaatgctataccttctttaaaaaattgtggGCCTAATGAATTTTTACGTGAATGCTTTgcaaaaaattgttcaaataattcagtgaataataaaaacttagcaTTTTTTCCATTTCCAATTGCAAGAAATAAagctactCTTTGGATTAGTCTTTCAAatcctaaaaaattaaatccatttacaaattttaaaaaacgaagATATTTATGTGcaaagcattttaaaaatgatgattttaaattggGTTCAAGAAAAACAGTACTTAAGTCTTATACCAAAATTATTCCTActatttttaacgaaaatgttgaaatatcaaaagaaaataatactaaagaaggaaaaataataaaaaatacagttaatACTGCATTTAATAAGTTCGATTCtagtttagataatttaaataaaaaagaattacagAACAATTCCAGAACACTTCctattattttagaagaaaGTACTATGAATTCTTATAATTGTGATACAGTTTCTTTAGAAAGTAATCAAATAGaacattttgattttactTTAGATGTTGAGAAAGATTATTGTAGATTATGTGCAAAACTAGTAACTGTAAATTCTTTAACTCCTATATTTGAGAACGAGATTTTTACTGTTAatggaaaaaaattagatGAATTAATGCCAAAgaagattacaAAAGAAGATAATTTACCAAAAATGATGTGTTCAGAAtgtgtattaaaattagacaCATGCCATAAAACTTTAcaggaatttttaaatgctgAATCTCAgctaaaagatattattaaaaaagaaaatgtttacaAAGCTCAACTTAATTCTGAATTaaaaaaaatgcAGAGAAGTTGgactgaaaaaataaaaataacgattGTTGAAGatgttaaatcaaataatgaaaatcaaCAAATAGAATTAAGAAATTGTTCAATATGtgagcaaatattttttacgaaaCAAGAATTAgaagaccattttttaaaagtacatCCTAAGAAaatagatgaaaataaaattgcatgtaCATTAAAACCTGATATACCAAATAAATCTGAAACAAATATGTCTAAAATATCACAATTAAAAGGATATTCcagaattttatatgaatgtaaaatttgtaaatctctttatttgaaaaaacactttttaattGAGCATGCATTATCTTTTCACTCAGaagtaaatgaaaatagaataGTATGCGGCATTCTTAAACTTAATCACAaaagtgaaattataaaatgtgcgAAATGTAATAATGTCttcataaatagttttaaatataaaaatcatatgcGTAAGCATGATGAAATGACTTGTGGAAAATGTGGATATGTtgctaaaacaattttagaaattcagAAACATATTAGAGACCATGAAGAAGAATTAAAGAatacattgaaaaataatgatgaaatattaaatgatagcATGCCTCAATTAGTAAATATGAcagaatatacaaaaatactggatgagataaaaagaaataATTTTGAATTGAAACAACGTGAAAACATGCGCAAAAGATCCTTGTGTCATATATGCGGTAAATTTTTCCTTAatacagtatttttaaattatcaccTTCTAAGACATTCGGAAAAACGTTCTTATAAGTGTAATTTATGCTCTCAagcatttaaaactattttatgtttaagaaGACATAAGAAAATTCATATAActgaacaaaattatatttgtcactTTTGTGGAAAACAGTTTCGTCGTCAAGGAACTTTAAATGCTCATTTTAAAACGCATGCAACTTCAAAATCACATCATTGTGAAGTATGTGGTTTAGGGTTTCATAACAAAACTTCGTTAACGAAACATATGAATACACATAATGTAActgaagataaattatatcaatgtaAATATTGCGACAAGGAATTTCAGTACAAATCTATATATCTTGTACATGTACGTGCGCATACAGAAAAGAAAAGATCATATCCTTGTGATATGTGTGATAAAATATACCCTACAAAACATCAGCTGGAATTACACCACCGAATACACACTGGTGAAACATCAATTAGTTGTAAAATATGTGGTAGATCTTTTAAAGCTTTAGCAACAATgagaaaacataaattaatccaTACAGATATTTTACCACACGAATGTCTTGAGTGTGGTCGAAAATTTCGTTGGAAACATTCGTTAATTATTCATCGTAGAACTCACACTGGCGAGCGTCCTTATAAATGTTCAAATTGTGGTAAGGGGTTTATAAGTCATGGAGGTTTGAATAAtcataaacaaatacatactcggccagataaatataaatcatctATGAAATTTGAGGAAGTAATAGCAGCTGTGAATTGTATCAGTGatggtaataatattaaagaaaataatatacttaaagataaaatttctaattcaaAATCTACCGTTAATGATAGTAATAGTATATTGAAATCATTACTATTAGggtaa
- Protein Sequence
- MDHSYIESGPVHESTRYIEDSDDENNKENTITPSKINNTPPTATNQTEENSNKLPTTNIGILRQTFNTTCSIPHCLNFRRELIHVHSFPSNPMLCRKWVDALGLRKPVKEYMKICSDHFKENDFVPGSFYKELKKNAIPSLKNCGPNEFLRECFAKNCSNNSVNNKNLAFFPFPIARNKATLWISLSNPKKLNPFTNFKKRRYLCAKHFKNDDFKLGSRKTVLKSYTKIIPTIFNENVEISKENNTKEGKIIKNTVNTAFNKFDSSLDNLNKKELQNNSRTLPIILEESTMNSYNCDTVSLESNQIEHFDFTLDVEKDYCRLCAKLVTVNSLTPIFENEIFTVNGKKLDELMPKKITKEDNLPKMMCSECVLKLDTCHKTLQEFLNAESQLKDIIKKENVYKAQLNSELKKMQRSWTEKIKITIVEDVKSNNENQQIELRNCSICEQIFFTKQELEDHFLKVHPKKIDENKIACTLKPDIPNKSETNMSKISQLKGYSRILYECKICKSLYLKKHFLIEHALSFHSEVNENRIVCGILKLNHKSEIIKCAKCNNVFINSFKYKNHMRKHDEMTCGKCGYVAKTILEIQKHIRDHEEELKNTLKNNDEILNDSMPQLVNMTEYTKILDEIKRNNFELKQRENMRKRSLCHICGKFFLNTVFLNYHLLRHSEKRSYKCNLCSQAFKTILCLRRHKKIHITEQNYICHFCGKQFRRQGTLNAHFKTHATSKSHHCEVCGLGFHNKTSLTKHMNTHNVTEDKLYQCKYCDKEFQYKSIYLVHVRAHTEKKRSYPCDMCDKIYPTKHQLELHHRIHTGETSISCKICGRSFKALATMRKHKLIHTDILPHECLECGRKFRWKHSLIIHRRTHTGERPYKCSNCGKGFISHGGLNNHKQIHTRPDKYKSSMKFEEVIAAVNCISDGNNIKENNILKDKISNSKSTVNDSNSILKSLLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229771;
- 90% Identity
- iTF_01229771;
- 80% Identity
- iTF_01229771;