Pcha010820.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- NEEE01002013.1:8267-10430[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.6 7.6e+02 1.2 0.4 3 17 58 72 57 73 0.89 2 13 0.00044 0.039 14.7 3.9 2 23 228 250 227 250 0.97 3 13 0.0016 0.14 13.0 3.5 2 23 261 282 260 282 0.95 4 13 0.0014 0.12 13.1 1.9 3 23 291 311 289 311 0.98 5 13 0.28 24 5.9 0.4 3 23 319 339 318 339 0.91 6 13 0.015 1.3 9.8 3.2 1 23 351 374 351 374 0.93 7 13 0.064 5.6 7.9 0.2 2 20 431 449 430 451 0.93 8 13 7.7e-06 0.00068 20.2 1.6 1 23 462 484 462 484 0.94 9 13 0.003 0.26 12.1 0.2 1 23 490 513 490 513 0.94 10 13 4.9e-07 4.3e-05 24.0 2.4 1 23 519 541 519 541 0.99 11 13 8.5e-05 0.0075 16.9 1.9 1 23 547 569 547 569 0.98 12 13 6.9e-06 0.00061 20.4 1.8 2 23 576 597 575 597 0.97 13 13 7e-05 0.0062 17.2 1.8 1 23 604 627 604 627 0.97
Sequence Information
- Coding Sequence
- atgacgaGTAATAAcatcagttttaaaaatatttgtcggCTTTGTGCTAAATccaataattacttattaagtTTATACGATTTTGATCAAGATGGCATTTCCTTCGAAGAAAAACTGAAAACAATCTGCGGAATtgaaatTGGATCGGCAGATGTTTTACCTAAAAAAATATGCCAACTATGCCATACgaaattagaaaatagttaCCAATTCAGAAATATGTGCCTATCatcaattcatattttagcTAGATATTTAGATGATAATGATGGTATAGAAGAATATTTGGAATCAGAATTTGAGACTGATAATCCAGCGGATGATtctgaaattttgtattacttGGAAGTAGATGAAGATTATTTAGCTGAAAATACTTCGGCTTTTAATCTATCAGATATTGaatcgtattttaataaaactgataaaattaaCGGTGAAACTAAAGAATGCaattctgataaaaatatgttagaaGAATATCTTGAGGAGAGTTTTaccgaaacaaatttaaataattctgataGTACTAAAAATGATCAGGAAACAAATGAAGTAactgaagaaataaattcaaatgaagTTGAAGAAGAAAACGAACcggtaattgttaaaaaaaaattaaacaaccaTAGACATTATAACAGTAAAGTAAATAATCACGAcacgaagaaaaaaaataagtgtAAAGTCTGCCATAAACGTTTTAATTcagaatataaagtaaaattacatatGCAACGTATCCATAGACAAATTTATCTCCAGGAATGTAAAGTAACTTGTCGTAAATGTGAAATGAAATTCGAACATACTCGAAACTTAAAACGCCACATGGTTTATCATAATGTAACATACTCTTTCTTCGGTTGTAATTTctgtgataaaaaattatattccaaaaaatcttggagaaaacatattaaaatacatgacgaaaaaattaacgaaatttgtaaaatatgtaataaaacattatttacatcCGTTGGAAAAGTTTATCATATGGATTACCACCGAACTAAAGAAAccctaacaaataaaacattttattgttgtcaTACATGTTCCATAAATTTCACTAAATACGAAGAGTTAGAATCACATGTTGTTTCACtgcatttaaaagaaatagaacactcagaaaataaaactgataaaagtATAACACAACATTTCGATGATGTTGAaagaaatttcgaaaaaatctTTAACGAAACTCCTAATTCAAACGAAAAtgattctgaaaataaaaattcacttttagaaaatataaaatctataactttaaaatgtaatatttgtagcctttattacaaaaatttactagaattaaaaaatcatgtaaCTGAATGTTattcgaaaataaatgttcCAAAATCTTTTATGTGTGATATTTGCgggaaatgttttaaatcagCTTTTCTTTTAACTAATCATAAAGCCGGGCATAGTAGTTTACGTAAGTTTATTTGTGATATTTGCGGGCAAAGATTTAAATGGTATAATGATTTGATTAATCATGTTAGTCGTATTCACGAAAATATTAGACcttatgtttgtaaatattgcgGTAAAACTTGTGCAACATCAGCGACTTTAAAAGCACATTATAGAAGTCATAATAAAGAGAGACCATATAGTTGTCAAATTTGTAATGCAGCTTTTGCGcaaaattgtagtttaaaaGAACATATGTTTAAACATACCGGTGGACAGGATTCAACCTGTTCTAtatgtaataaagtttttaaaacaccGTTACGGTTAAGGACTCATATGAAACGACATAATACTCAAAGGAAATTATATCCGTGTGATATTTGTAATAGAATGTACACTGAAAAAAGTAGTGTTAAAAAACATAGAcagaaatttcataattattcgtATCcagaatcaaattaa
- Protein Sequence
- MTSNNISFKNICRLCAKSNNYLLSLYDFDQDGISFEEKLKTICGIEIGSADVLPKKICQLCHTKLENSYQFRNMCLSSIHILARYLDDNDGIEEYLESEFETDNPADDSEILYYLEVDEDYLAENTSAFNLSDIESYFNKTDKINGETKECNSDKNMLEEYLEESFTETNLNNSDSTKNDQETNEVTEEINSNEVEEENEPVIVKKKLNNHRHYNSKVNNHDTKKKNKCKVCHKRFNSEYKVKLHMQRIHRQIYLQECKVTCRKCEMKFEHTRNLKRHMVYHNVTYSFFGCNFCDKKLYSKKSWRKHIKIHDEKINEICKICNKTLFTSVGKVYHMDYHRTKETLTNKTFYCCHTCSINFTKYEELESHVVSLHLKEIEHSENKTDKSITQHFDDVERNFEKIFNETPNSNENDSENKNSLLENIKSITLKCNICSLYYKNLLELKNHVTECYSKINVPKSFMCDICGKCFKSAFLLTNHKAGHSSLRKFICDICGQRFKWYNDLINHVSRIHENIRPYVCKYCGKTCATSATLKAHYRSHNKERPYSCQICNAAFAQNCSLKEHMFKHTGGQDSTCSICNKVFKTPLRLRTHMKRHNTQRKLYPCDICNRMYTEKSSVKKHRQKFHNYSYPESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -