Pcha002881.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- CM008235.1:1327467-1331009[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.8e-05 0.0033 18.0 0.7 2 23 81 102 80 102 0.96 2 15 4.1 3.7e+02 2.2 1.4 2 17 108 123 107 128 0.83 3 15 0.00035 0.031 15.0 2.3 1 23 141 163 141 163 0.95 4 15 0.00095 0.084 13.6 2.0 3 23 168 189 167 189 0.96 5 15 0.005 0.44 11.3 9.7 1 23 199 221 199 221 0.98 6 15 8.4 7.4e+02 1.2 0.5 2 23 227 248 226 248 0.89 7 15 0.15 14 6.7 2.6 2 23 255 276 254 276 0.97 8 15 0.0034 0.3 11.9 0.9 1 23 279 302 279 302 0.97 9 15 0.00037 0.033 14.9 3.1 2 23 312 333 311 333 0.98 10 15 0.0021 0.19 12.5 3.1 2 19 340 357 339 363 0.93 11 15 2.8e-05 0.0024 18.5 0.3 2 23 374 396 373 396 0.94 12 15 0.0017 0.15 12.8 3.4 1 23 403 425 403 425 0.97 13 15 0.00026 0.023 15.4 0.1 2 23 433 455 432 455 0.93 14 15 3.4e-07 3e-05 24.5 1.9 1 23 461 483 461 483 0.97 15 15 0.0001 0.009 16.7 4.5 1 23 489 512 489 512 0.94
Sequence Information
- Coding Sequence
- atgacatcagaaaataatgaatcatTAACGTCGATCAAAGATCAGatggaaaaaatgtttgaaacaaTGCATAATTTAGAAACAGGTGATAAAAATGAAGCGTTAGGGTATTTACGCAAATGTTTAGATTTAAACAATGATACATcagaaaaaacaacaaatattaaaacaaaaaaatgtaaacgtaaaaatgttaaattcaaaaatttaaaagcgcATAAAGTCAAACGACCGATACTTAAATGCCGTATCTGTGGAATAACAACTAAAAccaaatctttattattaaaacatttagaaTCTCATATTGGTACTCCAATATCTTGTAGGACTTGCAAACGAGATTTTAACAATCGACCATCGTTTCTTTGtcatatttcattgaaaatgtgtcgcaaacataaaaaaattattcgaaaatatttctgtGATCAGTGTCCAAAGGTATTTAGGTTTAAACGGCATATTGAGAAACATCTAGAAGGCCATAAGCGAAATAATTGTACTTATTGTGATACGCGTTTGACTAGACGAAAGCATTTAATAGAACATTTATTATCTGTTCATTCGATTAAATTAGAACgagctattttatttaaatgcgaACACTGTGAAAAGCgTTACGTTAAAAAGCATTCATTATACCATCATCTAAAACAACacgtagaaaataaaatagtttgcaTGGAATGCGGAAATATAAGTTCCACAAACGAAGAACatgataaacattataaagAGCACGAAAAAGACAGACCATGGAAATGCGATAAATGTAACGATAGATTTTTAAGACGACAACAATATTTAAGTCATATGAAAagacATGATCGCTATAAATGTGTAACATGCAACGAAACATTTGCTTTAAAATCTAGAGTTATTCGACATAAACAACGCGGACATACTGTCCAAGGTTTAGAACCTCAAATGAAATGCCCTCATTGCCCGAAAGCATTCCATCGACGCTTACCattacaaattcatttaaaaaaacatctagatgatAAAGTAATGTACTGCAAATATTGCGATAAAAACTTTCGTTCAccgtatttatatttcaaacattgCGCGACAACTTTACACGAAATAAACGCACcagaaaaacaacaattagTCTGCGAAATATGCGGAAAACTCTTCGTAAAAAAATACCAATTAAACCAGCATTTATACCGTGTTCATAATCAAACGAAACAAACATTTTCTTGCGAATATTGCGGACATAAatctacaaataaaacttacatgGAACGACATTTATCGCtgcatttagaaaataaacgcGAGGTGATGTGCGAACAATGCGGTAaagctttttataatataacaacttTGAAGGATCATATTGCGTATGTGCATTTACAAGGACGTGTTTTTAAATGCGATCAGTGTGATAAAGCGTTTAAACGAAATTCTGAATTGATAAGACATAAAACAAGTCACTCTGAGTTGCGGCCGCATGTTTGTAAGACTTGTGGATTGTCTTATAAACGAAGCACTCATTTAAGACGCCATGAAGAATCGCAACATGGCTTAACTTCGAAAAATAGGCGAGTGCAACGGTTGATTAAAGACGCGAATGGGGTTTTAATACCCGTTCCGGAAGAGAAAAAAGCTAAAGTtactaataaaaagaaaaaccaaaCACAACAattacaacaacaacagcagcagcagcaacaacaacaacagattttatcaataatggATGTTCAATTAGGCGAAATGATAACTTTAACATTACCAGACGTTCATAATGATTTCAATAACATCGCGTTAAATCTCAACAATAGCTTCACTCAAGATATTATACAAACAGTCGAACTTCCTAACTTAGTTATAAACGCCgctgataatataattttatccaaTGATCAGgcattaaatttagttaactCATTAGATCCGAATTATAACAATGAACAGCttacaaataatactttattaactGATAatgttttacaacaaaatatttctattcaaaattCTACAActtgtgatattttattaccggaaaatagaattttaaatttacagacTCAATCAAATGAGCAAGGATTTTCTCAAAATCCGTATCAATTTctttga
- Protein Sequence
- MTSENNESLTSIKDQMEKMFETMHNLETGDKNEALGYLRKCLDLNNDTSEKTTNIKTKKCKRKNVKFKNLKAHKVKRPILKCRICGITTKTKSLLLKHLESHIGTPISCRTCKRDFNNRPSFLCHISLKMCRKHKKIIRKYFCDQCPKVFRFKRHIEKHLEGHKRNNCTYCDTRLTRRKHLIEHLLSVHSIKLERAILFKCEHCEKRYVKKHSLYHHLKQHVENKIVCMECGNISSTNEEHDKHYKEHEKDRPWKCDKCNDRFLRRQQYLSHMKRHDRYKCVTCNETFALKSRVIRHKQRGHTVQGLEPQMKCPHCPKAFHRRLPLQIHLKKHLDDKVMYCKYCDKNFRSPYLYFKHCATTLHEINAPEKQQLVCEICGKLFVKKYQLNQHLYRVHNQTKQTFSCEYCGHKSTNKTYMERHLSLHLENKREVMCEQCGKAFYNITTLKDHIAYVHLQGRVFKCDQCDKAFKRNSELIRHKTSHSELRPHVCKTCGLSYKRSTHLRRHEESQHGLTSKNRRVQRLIKDANGVLIPVPEEKKAKVTNKKKNQTQQLQQQQQQQQQQQQILSIMDVQLGEMITLTLPDVHNDFNNIALNLNNSFTQDIIQTVELPNLVINAADNIILSNDQALNLVNSLDPNYNNEQLTNNTLLTDNVLQQNISIQNSTTCDILLPENRILNLQTQSNEQGFSQNPYQFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -