Pcha008819.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- CM008230.1:5940988-5942373[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.7 6.8e+02 1.3 0.4 6 18 8 20 6 20 0.88 2 10 0.00028 0.025 15.3 1.1 1 23 186 209 186 209 0.94 3 10 9.4e-05 0.0083 16.8 8.4 1 23 214 236 214 236 0.97 4 10 0.011 0.95 10.3 8.7 1 23 242 264 242 264 0.98 5 10 0.0001 0.0089 16.7 1.2 3 23 272 292 270 292 0.95 6 10 1e-06 9.2e-05 22.9 2.8 1 23 298 320 298 320 0.97 7 10 3.5e-06 0.00031 21.3 4.9 1 23 326 348 326 348 0.97 8 10 0.00018 0.016 15.9 0.5 1 23 354 376 354 376 0.92 9 10 1.5e-06 0.00013 22.4 3.9 1 23 384 406 384 406 0.95 10 10 4.1e-07 3.6e-05 24.2 2.1 1 23 412 435 412 435 0.97
Sequence Information
- Coding Sequence
- ATGGATAATTCAGAAAGATtctgttttatatgtttttctgATAGTAAAGatctaataaaactaaatgccAAAGATTGTGATGATATATCTTATgtagataaatttaacttttgctCATTAGGAATTGACTGGTTAGaagaaaattcattattaaatctatgcAAAAATTGTAGTAACAATCTACAAATTGCGTATGACTTTAAAgaactttgtttaaaaaatagctcAAGAATACAAGGATATATaaaccaattaaattttgtaacagaAACAATTCAAAACTTAAATGATTCTTCTATGTCATTTTCAGAtatacaatactctgatgacgatttaaaatttattgaaaataatttacaagttgataaattaataagtagcactctatttaatcaaatacaaCATGAagattgtataaataataatattataagtgcATTACGTTCGGAAGATGAATATTTAGGTATCAGTCTTAATTTTaccgataaaatattaactgataatataaaaactaaaactaataaaaaaaataaacataaaccaaatgataatatttatatatgcaaaaaatgtgaacagaaattttgtttaaaatcacTTTTGGAAGaacatattattgaaatacataaaacgcGATTACATTCATGTAGTACATGCCacaaaagttttcaaaaaaaatcacatttaaatgatcatattttaactcatacaaatacaaaaccaCATACTTGTACCTTCTGTAAGAAGCAATTCTTACAAAAAACtcatttaacaaaacatttaagtaCTCATACCGGATTAAAAAAACATCTTTGTTTAGtatgtgataaaaaatttgcgTTAAAAGCTTCACTAAGTAGTCATATGTTAACGCATAGTGACTGCAGACCATATGCGTGTAAATATTGcaagaaaacatttataaaacgatCTCATTTAAATGATCATATTTTGATTCATACAGGTGAACGCAAACACGTTTGTAATATTTGTGATAAACAATTCTTTCAAAAATCCCACTTAAATTTACACATGTCATCACATGCGGCTGAGAAAAAATTCGATTGCATAATATGCGATAAGAAATTTTCGTTAAAATCTTCGTTAAATGGTCATCTTTTAACGCATAGCAATGCCAGGTTAAGACCTCATGCTTGTAAAGTGTGtgataaaacatttacaaaaaaatcgcatttaaatgatcatattttattgcatactGGAGATAGACCCCacaaatgtaattattgtcaaaaaggttttatacaaaaagctcaacttaaaaaacatattaatataatacataaagacaaaataaaagaataa
- Protein Sequence
- MDNSERFCFICFSDSKDLIKLNAKDCDDISYVDKFNFCSLGIDWLEENSLLNLCKNCSNNLQIAYDFKELCLKNSSRIQGYINQLNFVTETIQNLNDSSMSFSDIQYSDDDLKFIENNLQVDKLISSTLFNQIQHEDCINNNIISALRSEDEYLGISLNFTDKILTDNIKTKTNKKNKHKPNDNIYICKKCEQKFCLKSLLEEHIIEIHKTRLHSCSTCHKSFQKKSHLNDHILTHTNTKPHTCTFCKKQFLQKTHLTKHLSTHTGLKKHLCLVCDKKFALKASLSSHMLTHSDCRPYACKYCKKTFIKRSHLNDHILIHTGERKHVCNICDKQFFQKSHLNLHMSSHAAEKKFDCIICDKKFSLKSSLNGHLLTHSNARLRPHACKVCDKTFTKKSHLNDHILLHTGDRPHKCNYCQKGFIQKAQLKKHINIIHKDKIKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -