Pcha004648.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- NEEE01001117.1:55683-61584[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.4 5.6e+02 1.6 0.0 5 16 190 201 189 203 0.87 2 15 0.27 24 5.9 2.4 1 21 475 495 475 496 0.94 3 15 0.12 10 7.0 0.9 2 20 539 557 538 559 0.92 4 15 0.0073 0.64 10.8 4.1 1 23 579 602 579 603 0.96 5 15 0.0012 0.1 13.4 0.9 2 23 614 636 614 636 0.91 6 15 4e-05 0.0036 17.9 3.4 1 23 669 692 669 692 0.97 7 15 0.00014 0.012 16.3 0.3 1 23 698 720 698 720 0.98 8 15 0.00041 0.036 14.8 0.2 1 21 726 746 726 747 0.94 9 15 0.0026 0.23 12.3 1.4 1 23 760 783 760 783 0.98 10 15 0.0027 0.24 12.2 0.0 1 23 792 814 792 814 0.98 11 15 0.00063 0.055 14.2 1.8 1 23 819 841 819 841 0.98 12 15 2.8e-05 0.0024 18.5 1.3 2 23 847 868 846 868 0.96 13 15 1.2e-06 0.0001 22.8 3.6 3 23 876 896 874 896 0.96 14 15 3.9e-08 3.4e-06 27.4 0.5 1 23 902 924 902 924 0.99 15 15 0.0041 0.36 11.6 1.6 1 23 930 953 930 953 0.97
Sequence Information
- Coding Sequence
- atgccGAAGTGTATTGTTAGAAGTTGTATAAATCAATCAGAATTAACACATAGAATAACAGTGAATAAAGAATTGAGACTGAAATGGCTTAAAAATGTCGATAGACTAGATCTTTTAGAAAAAACTGATACAGCTGTATCACATATGGTAGTTTGTAGTAATCATTTtccacaaaatttatatagtttccCTGGtagtaaaaaacttatatctaAAGCTTGTCCGACTTTAGATCtagCTGAATTTTcatcacataaaaataatgatgaacCAGAATTATTCCTTGGTCTTgaagAAGCagtaaatataacaacaatgcTTAAAAGCACTGCATTACCAACCCGAAATTTACCAACATACGAAGGTAAAGATATCAAATGCAAATGCCATTTACCATTACCAAGTTATGCGAGTTATTGTTGCGTCCAAGAATGTAATCAAAATTCTTTACGATttcctgaaaatattttccatcaaTTACCAATATCACATGAGTTAAATGTATGTGAATGTAttggtttaaataatttaacatctcCAGcagattttttaagtaaaaatttaaaagtttgcgatcaacattttaaacaaaatgctatgttgatttatattaattctgcGAAAGTTACTATTACTTCGGATTTTATTGCGAAAAAAGTTAATGAAataaaatctgAAGATTCGTCttgtaatgttattaaatatacttcgGTTTTAAACGAAAATTCTCTAccgcaaaataatattttattaaatgcgtTAACTACTCAACCAAAAATACCATCAACTTcagataaatttaaaacttataacacTATATTAGatccaaatataaaaataaaaaatgaagaagATTACGATATGGACCAAATATGCCGAATATGTTTACAAAACggcgatttaaaaaaaatcgacaATAATTCATATTACGAAAAAGTTACCATTACAGAATTAGTATCACTTTGTATAgatatttcagATATAAGGGAAGTTAATTTTCcacataaaatatgttcagaatgtattaaaaatttaaaatctatatataatttcaaaaaaaagtgCGAACATTCAACcgatatattacaaaaatatattgataaacaaaataatatagttaaacaACGTTTAGATTTTGaacattgttataataaaccaACAGTCCcgaaattagatttaaaacaaattatggaAAATGCAGGAATTTCTACAGATGGtacagattttaataatatcgaaGGGTTTATAACAACACCagaagaaataatgaaatcaGATATCCCACcagaaatagttaataaaataaaagatacgaAATCAATTCgtaaaaggaataaaaaactatcgaaagatattttagaaacgattaaagaaaaacgtaatattaaaatcggtggtaaaaatttcgttttagCGAAAGCATTTACATGTAAAACatgtaaagatatatttttcaccgaagaatcattaaaaaatcatacatgcataaaaaaatctgaatacGTTCCATcaaaaccatttaaatataaaaaatgtatgaaatgTAAAGTTATAATTCATAATCAATTTGAACAAATAACTCATACGTGCTTAAAACGAAAAAGAACTCAATTAACTTGTAGGAAATGTggtgttaaatttaaagcatataGTTTGTTATTGGAACATACGTGTGATCCTGAAAATGTTGAGAAATATAAGGAAAaagtttcgaaaaaaattggTCCGCGTGTTTATAGATGTAAAGATTgtagtaataaatttgattcattTAAAGAACTTGTTAAACATAAGAGATTAGATCATCATCAACAGaatatttatcagttaaaaatACCAAGATGTCgttattgcaaaataactttcaaaaatatggACGAACTGCAACAACATCGAGCAGCATCCCATGGTACAAGCAGAATAGTTACATGTCCtacatgtttaaaacaaatgactgcAATATCTTACCATACGCATAAAGATATCCACTTAGTAGAAAAACGATTCTGTTGCGAATATTGCGGAAATCGTTTCACAAGTCGAACAAATTTCCAGGCACATGTTAAAACAgttcatttaaaactaaaacctTACGTTTGTGATATTTGTAATCGTGCGTATAATGTTCGATCGAAATTAatagaacataaaaatatgcattcggatgttaagaaatatatgtgCGATATGTGTGGCGCTCCTTTTGTTTATAAGTCGTCGCTTGAGTcgcattttaaaaagaatcgATGTGGTAAAACTAAAGGTTTAAATGTTGTCCATAAATGCTCAATTTGCGAAGAAATCTTACCAACACGCgcaaaattaaaagaacaccgCAAAACGTATCATTATACTTCAATCAAAAAACGTTCATACACATGCGAATTATGTAAAGTACCCTTCGATGGCCAAGTAGATTTAATCAATCATgagttaacaCATGGAGAGAAACCATTTTCATGCGTTTATTGTAAACGTAGTTATTTCACACGAGAACGATTAGaacaacatataaaaattcatttaactaTAACTTGTCGTTGTGAAGTTTGTTCAAAAGGATTTGCGAATAAAGTTCTGCTTAAACAACATATGTCTGTACATACTGGagagaaaaaacatttatgtacGTATTGTCCGAAGCGGTTTTCCCAATCAGCGCATTTAAGCGCTCATATTCGGACGCACACcgGATATAAACCATTTCGATGTCCGCATTGCGATAAAGCATTTGCGTTAAATGGTAATTTAACAGCTCATATTCGAACACATACCGGCTATCAGCCGTATTCGTGTTTGTTTTGCGATCAAAGTTTTATTGATGTACGCTCTAGAAAGCGTCATATGATAAGAAAACATTATCATTCGATTGTTATGGAGGATCATTCGACTGTAAATAATGATGCTGATTAA
- Protein Sequence
- MPKCIVRSCINQSELTHRITVNKELRLKWLKNVDRLDLLEKTDTAVSHMVVCSNHFPQNLYSFPGSKKLISKACPTLDLAEFSSHKNNDEPELFLGLEEAVNITTMLKSTALPTRNLPTYEGKDIKCKCHLPLPSYASYCCVQECNQNSLRFPENIFHQLPISHELNVCECIGLNNLTSPADFLSKNLKVCDQHFKQNAMLIYINSAKVTITSDFIAKKVNEIKSEDSSCNVIKYTSVLNENSLPQNNILLNALTTQPKIPSTSDKFKTYNTILDPNIKIKNEEDYDMDQICRICLQNGDLKKIDNNSYYEKVTITELVSLCIDISDIREVNFPHKICSECIKNLKSIYNFKKKCEHSTDILQKYIDKQNNIVKQRLDFEHCYNKPTVPKLDLKQIMENAGISTDGTDFNNIEGFITTPEEIMKSDIPPEIVNKIKDTKSIRKRNKKLSKDILETIKEKRNIKIGGKNFVLAKAFTCKTCKDIFFTEESLKNHTCIKKSEYVPSKPFKYKKCMKCKVIIHNQFEQITHTCLKRKRTQLTCRKCGVKFKAYSLLLEHTCDPENVEKYKEKVSKKIGPRVYRCKDCSNKFDSFKELVKHKRLDHHQQNIYQLKIPRCRYCKITFKNMDELQQHRAASHGTSRIVTCPTCLKQMTAISYHTHKDIHLVEKRFCCEYCGNRFTSRTNFQAHVKTVHLKLKPYVCDICNRAYNVRSKLIEHKNMHSDVKKYMCDMCGAPFVYKSSLESHFKKNRCGKTKGLNVVHKCSICEEILPTRAKLKEHRKTYHYTSIKKRSYTCELCKVPFDGQVDLINHELTHGEKPFSCVYCKRSYFTRERLEQHIKIHLTITCRCEVCSKGFANKVLLKQHMSVHTGEKKHLCTYCPKRFSQSAHLSAHIRTHTGYKPFRCPHCDKAFALNGNLTAHIRTHTGYQPYSCLFCDQSFIDVRSRKRHMIRKHYHSIVMEDHSTVNNDAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -