Pcha005885.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- Sall1
- Assembly
- GCA_002278615.1
- Location
- CM008233.1:56695-60507[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.37 33 5.5 0.1 2 23 7 28 6 28 0.96 2 15 0.45 40 5.2 0.9 1 23 533 556 533 556 0.90 3 15 0.0065 0.57 11.0 1.3 3 23 628 649 627 649 0.96 4 15 5.1e-05 0.0045 17.6 0.2 2 23 659 680 658 680 0.96 5 15 4.3e-05 0.0038 17.8 1.3 2 23 683 704 682 704 0.97 6 15 2.1e-05 0.0019 18.8 1.8 1 23 710 732 710 732 0.99 7 15 2e-05 0.0018 18.9 3.1 2 23 739 760 738 761 0.95 8 15 0.048 4.3 8.3 4.0 5 23 774 792 773 792 0.97 9 15 9.4e-05 0.0083 16.8 2.3 3 23 799 820 799 820 0.99 10 15 0.36 31 5.5 0.2 2 23 836 856 835 856 0.89 11 15 2.1e-05 0.0019 18.8 1.8 1 20 862 881 862 884 0.91 12 15 5.7e-05 0.005 17.5 0.2 1 23 892 914 892 914 0.99 13 15 0.0019 0.17 12.7 6.8 1 23 920 942 920 942 0.98 14 15 1.1e-07 1e-05 26.0 2.7 1 23 948 970 948 970 0.98 15 15 0.00035 0.031 15.0 7.5 1 23 976 998 976 999 0.96
Sequence Information
- Coding Sequence
- atggaAGACCCAAAGATAGAATGTCCTGTGTGTACTTTATATTTACGGAGTGGAATAacgttaaaaaatcatttaagtagTCATCCGAAACAGAAGGTAATAGAAGCACTCTGTAGAGTCACGCAAGATGTTCAACCAAACACAAATATGCAACAAAAAATCATGAGTATTAATCAAACAGACACCCAAACAGGAAATATGGCGATAATGTCACCGATAAATacgttaaatacaaattttactcAAATAAATCCAATGAATCAAGCGTTTATTTACCAACAATTTATGAGTAGTTCCGGGACACCCTCTATTATGAACGTAAACCCGATAAATCAACAATTTGTAACTGTTCCGACTGTTTTTAATTCACAAATGATGTGTTCGCCGTATATgtttcaacaacaacaacaagttCAATTCATGTCTACAGCTACAAATATTCAACCATTACGAAGATCACGATCACAACAAATTTTACCGCGACCGTTATCAAACCCAGCTATTTGTGAATCACCCATAAATTTAACcgaaattcaatttgaaaatacattcGAAGCAAGCACTTCAAACCCGTTAAAACTAGAATCTCTTCGAGATGTATCATCAGAGACATGTACTGTGTCCACCGCAACAGATAATCTCGAAAATTTAACCGTTAATGATAGAAACCATCGAATATTATCATCCGATTATGATGAAGAAGATGATGATAATATATGTAATGATGAACATAAACAAAACGAGTCAGAAcctgatattattattgaaagaaaCGGTGGTGAAGTTGTTTCGGTGACAATTACAAACGTAGGAAGTTCTTCAAATGATAAAGAAGATGAAAACGTTGATGAAATTGAAGAAGAAGATCATTTATCTACGTCATGTCATACAACTAGAATTCAAACAGTTAAAAAAGAAGTTACTAATGAATTAAACGAagttattattgtttcaaatcaggataattttgaagaaatgaATACaggaaatttaactttatctaGACAAGAAAATAATGACATTATGATAGCGTCAAGTAGTAATATAGACAGTAATAATATTACGGTTTTAGAAATGACTGATGTAGGTTTTATCCTCCCTGATAATTTTATACCGACTGGACAATCTTTAATTACTAAAGTTAACGACGCTGActcaataaatgaaacaaatgacGATCGACCGCAAGAATTAATGTCAATAGGAgaagaaaatactaaaaatgttaaatatgttatcgaagataaattaattttcaatgtaGAAAACTATGAAGAAGTTAAATTAGACGATGAAAGTTTATCTCGGGAGAGTTTAAATATTCGCGCAGATGAACGAATGCCACCGCGAGGTGAATTATCAGAGCAGGAAAGTAATGGCGCTAGTGAAATTGGTTGGGGGAGTAGGATTTACCAGGAAGGAAGCTCAGGTATGTCAATTTCCTACGATTTATTAGCCCGGGAAAGTTGGGAAGGGTCTGATTGTTCAGACTCCGAAATGCCTCCTCTCCAAAGTAGGATACCCCCAACCCCATCAGACTACAAATCAGATGCCGACGATCCTGATGAATCACCTACAAAACCTTTAGTTTTCAATTACAATTGTGCAACATGCGGAGCATCTTTTCGTTGTCCGAAAGAGCGACGCGTCCATCAAGCAAACGAACATCAAACCGGCTCGTCTAGTTCCGtcatagaaaagaaaaaaaacatTCGCAAACGTCCAATCCGTAAAATATCCCGTAAAGCAAAACTAACCGAAGACGATTCAAAAGACAACATAATTCCgaaaaatgaaatagataatttatccGAAATAGAAAGTAAACCCGAcgtaaaaactgaaataaaatttgacgtAGATCAAATagacaatattttatgtagtaCATGCGGTAAATTATTCTCATCAAAACGCGAATggaatattcataataaaaaaatgcatggTGTTAAAATACCGTCTGCGAATCTAGTATGCACAAAATGTGATGTAACGTTTTCGCAACAGGATTTATTCGcggaacatttaaaaattcatccGTTAGAATGTAATATCtgctataaaacattttataaaattcaaaatttaaaaatacacttaCGACGACATACTGGAATACGGCCGTTTAAATGTGAAATTTGCACAAAAGatttcttttcaaaacaaaaattaaccgAACACATGAATGTGCATACCGGAAATAAACCAATTAAGTGTACAATGTGTCCGCAAACGTTTAAGCGATATTCGAATTTAGCGCAACATCGGAATtatcatcatttaaatattaagaaaaaggttaaagattatatttgtCATTGCGGGGAAATATTTCATTCGAAAAGTAAACTTCAATGGCATAAAGAAACGCATGAAGCTAAGCCGAAAGGTTGTAAATATTGTAACgagaaatttatacatatggcGAGTTTAACTAGACATATACGTCGTATTCATAATCAACGGTATGTTCCCGACGAAAGTCGGGAAAATGAAAACGTCGAATGCGAATTATGTaaaggaatttatttaaataaaagtcttCAAGCACATATGTTAACACACACCGACAAAAAGCAACATGTTTGTACAATTTGCAACAAAGTATTCTCAACaaaatggaatttaaaattacataaatggACTCACGCGTCGCCGACATCGAAGCCTTACAAATGTGAGGTGTGTCAAGCTGGGTATATTCGTCAAAGTGATTATATTTCACACATGAACTCGCATAAAAGTTTGCGTCCATACACTTGTAACTATTGTGGTTGTAAATTTAttcgtaaatataattgtatacgTCATGTACGCGAACACGAGGAAGGGAAGAATTTTACATGTAGCATatgtaataaaagtttttatcgtTCTTACTACCTCAAGGAGCACATGAGGGTACACAGCGGTGCACGACCATATTCTTGTCATATTTGTGGGAAAACTTCAACAACTAAGTCGAATCATAACAAACACATTAAAATTCATCACGCGAGGGAGCCAGTTATGACAGAGGgctga
- Protein Sequence
- MEDPKIECPVCTLYLRSGITLKNHLSSHPKQKVIEALCRVTQDVQPNTNMQQKIMSINQTDTQTGNMAIMSPINTLNTNFTQINPMNQAFIYQQFMSSSGTPSIMNVNPINQQFVTVPTVFNSQMMCSPYMFQQQQQVQFMSTATNIQPLRRSRSQQILPRPLSNPAICESPINLTEIQFENTFEASTSNPLKLESLRDVSSETCTVSTATDNLENLTVNDRNHRILSSDYDEEDDDNICNDEHKQNESEPDIIIERNGGEVVSVTITNVGSSSNDKEDENVDEIEEEDHLSTSCHTTRIQTVKKEVTNELNEVIIVSNQDNFEEMNTGNLTLSRQENNDIMIASSSNIDSNNITVLEMTDVGFILPDNFIPTGQSLITKVNDADSINETNDDRPQELMSIGEENTKNVKYVIEDKLIFNVENYEEVKLDDESLSRESLNIRADERMPPRGELSEQESNGASEIGWGSRIYQEGSSGMSISYDLLARESWEGSDCSDSEMPPLQSRIPPTPSDYKSDADDPDESPTKPLVFNYNCATCGASFRCPKERRVHQANEHQTGSSSSVIEKKKNIRKRPIRKISRKAKLTEDDSKDNIIPKNEIDNLSEIESKPDVKTEIKFDVDQIDNILCSTCGKLFSSKREWNIHNKKMHGVKIPSANLVCTKCDVTFSQQDLFAEHLKIHPLECNICYKTFYKIQNLKIHLRRHTGIRPFKCEICTKDFFSKQKLTEHMNVHTGNKPIKCTMCPQTFKRYSNLAQHRNYHHLNIKKKVKDYICHCGEIFHSKSKLQWHKETHEAKPKGCKYCNEKFIHMASLTRHIRRIHNQRYVPDESRENENVECELCKGIYLNKSLQAHMLTHTDKKQHVCTICNKVFSTKWNLKLHKWTHASPTSKPYKCEVCQAGYIRQSDYISHMNSHKSLRPYTCNYCGCKFIRKYNCIRHVREHEEGKNFTCSICNKSFYRSYYLKEHMRVHSGARPYSCHICGKTSTTKSNHNKHIKIHHAREPVMTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -