Basic Information

Insect: Pogonus chalceus
Gene Symbol: -
Assembly: GCA_002278615.1
Location: CM008230.1:12618096-12621887[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.008 0.7 10.7 2.0 3 23 202 223 201 223 0.96

2 19 0.084 7.4 7.5 0.1 2 23 231 253 230 253 0.94

3 19 0.037 3.3 8.6 0.2 2 21 346 365 345 366 0.93

4 19 4.2 3.7e+02 2.2 0.3 1 20 373 392 373 394 0.93

5 19 0.00059 0.052 14.3 0.2 2 23 472 493 471 493 0.94

6 19 0.00015 0.014 16.1 1.1 2 23 518 540 517 540 0.96

7 19 0.0017 0.15 12.9 0.8 2 23 547 569 546 569 0.95

8 19 0.16 14 6.7 1.7 1 23 582 604 582 604 0.98

9 19 1.8e-05 0.0016 19.0 2.3 1 23 610 632 610 632 0.98

10 19 0.00059 0.052 14.3 0.2 1 23 660 682 660 682 0.96

11 19 9.2e-06 0.00081 20.0 1.3 2 23 697 719 696 719 0.95

12 19 0.0022 0.2 12.5 1.8 1 23 773 795 773 795 0.97

13 19 0.0026 0.23 12.3 0.4 2 23 807 828 806 828 0.97

14 19 0.0047 0.42 11.4 4.0 1 23 858 881 858 881 0.96

15 19 8.8e-07 7.8e-05 23.2 3.5 1 23 894 916 894 916 0.98

16 19 0.00028 0.024 15.3 0.5 1 23 926 948 926 948 0.98

17 19 0.0011 0.1 13.4 0.4 2 23 952 973 952 973 0.91

18 19 0.039 3.4 8.6 1.2 2 23 1006 1028 1005 1028 0.93

19 19 0.001 0.091 13.5 1.1 1 23 1062 1085 1062 1085 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.008	0.7	10.7	2.0	3	23	202	223	201	223	0.96
2	19	0.084	7.4	7.5	0.1	2	23	231	253	230	253	0.94
3	19	0.037	3.3	8.6	0.2	2	21	346	365	345	366	0.93
4	19	4.2	3.7e+02	2.2	0.3	1	20	373	392	373	394	0.93
5	19	0.00059	0.052	14.3	0.2	2	23	472	493	471	493	0.94
6	19	0.00015	0.014	16.1	1.1	2	23	518	540	517	540	0.96
7	19	0.0017	0.15	12.9	0.8	2	23	547	569	546	569	0.95
8	19	0.16	14	6.7	1.7	1	23	582	604	582	604	0.98
9	19	1.8e-05	0.0016	19.0	2.3	1	23	610	632	610	632	0.98
10	19	0.00059	0.052	14.3	0.2	1	23	660	682	660	682	0.96
11	19	9.2e-06	0.00081	20.0	1.3	2	23	697	719	696	719	0.95
12	19	0.0022	0.2	12.5	1.8	1	23	773	795	773	795	0.97
13	19	0.0026	0.23	12.3	0.4	2	23	807	828	806	828	0.97
14	19	0.0047	0.42	11.4	4.0	1	23	858	881	858	881	0.96
15	19	8.8e-07	7.8e-05	23.2	3.5	1	23	894	916	894	916	0.98
16	19	0.00028	0.024	15.3	0.5	1	23	926	948	926	948	0.98
17	19	0.0011	0.1	13.4	0.4	2	23	952	973	952	973	0.91
18	19	0.039	3.4	8.6	1.2	2	23	1006	1028	1005	1028	0.93
19	19	0.001	0.091	13.5	1.1	1	23	1062	1085	1062	1085	0.95

Sequence Information

Coding Sequence: ATGGAGCAAGtggtaattagaaattataattctgtATGTCGTTTATGTTTATGTGAAGATGATTATAATATGATATCTATATTTGATGAAACACGTATATTTTTGCCACAAAGAATTGCAGCATGTGTAAATGTTGAGGTGCGTACAACTGATTTAATGCCAACAACAATATGTAAACAATGTCTTAATAAAGTAGATGACTGGTTTGAATTTAAACAGCGCTGTGATGATTCTCAAGCTAAATTACGTTATTGGAGTGATGTTCCTTCTacaaataataagcaaatttatcaaacggGTTTACAAATTAAAGAGGAACCTGAAGCAGAAGAAcaaactgatttaaatatactgtcaaatattaaagttgaACCTATCGACACGTATGACTATGAAGAGCAAGAAGAGATAGAAATAATAGAACATTTGGATTTAACTTCGCCATATGAATCATTTTTCGAGGATGAAATTTCGATAGATGATTCTCTTCTAATTCCAACATTAGAATTACCTTCTAACGTTCATGGTTTAGATGCtcctgtaaataaaaaaccttttatagaaatgacaaatggtaacttaaatatttcacaatcgaattattgtagaatatgtaatagatattttacaaaatactcAAATCGTTTACGACATGAACGATCAGTACATTGTTtagatttagataatttaacttGTGAACGTTGCgatgatatttttacaaatgagGCTGAATTAGTAACACATAGTAAAATAGTTCATGCTGAATACAATAATATCGATAATTTATCTCCAACGAATGATATTATTGATTCAAGTGTAGAGCTTACAACTTGCACTAGTTATAATGATCCTATGAGTTCTTGTCAAATTGCTTCTACTGCTAAAAAATCTACAAAGAAAGTTTCTCATGCACCTTTCATAAAATTCGCTAATAAATTACGATTATTACGAGAAAATTCTCACGATTCAGAACCTGTACATTTGcaatcttttatttcttttcataatcgtataaagaaaattattaacgaTCTTACTTGTGATATTTGCGAGAAAAAATCTGCaactagaaaaaatataatgaatcatttattaaaaactaatataattaatagatataCATGTTATTCCTGTTTTGTTACAATGCCGAATAGATCTGAATTTATGAAACATGTAGCAAAAAGAATTTGTAAACAGCGTGCCcgtgcaattaaaaataaccctTCTCAAGCtcatatgaattttatatgtgaattctgtaataatattaatgttcaTATAACGCATATAAAATCACATTTAAAATCtcatataataaaaccatGTCCAGAAAGTTGTGAAAAATGTCTACTATACTTTCAAAGTGATGATGAATACAGCGAACATATTTCTGGACcttgtttttataagatatattgtAGCATTTGtgaaaaacgttttatttctgaaagtgattttaattctcattcaataattcatcaagattcaaatataaataaagaaaattttgattttcttgaTGAAGCTGATACACCTGAATACTGGGCTAATAAATgtgttgtttgtttaaaagatTTCTCTTCTTCTGGGAATTTAAAAAggcattacaaaaatttacatcctaaatataaaatacaaacatgtCAATATTGTAACagggattttaaaaatactacagATCTTTTAGGTCATATTGAGAAAATGCATTCTAATACTGATCAGTCTTATGAatctagtaataatttttcatgtgTTCAATGTGGTTCTTTATTTGATACCTTAAATATGTGGTGTGAACATCAAAAAACTCATttagcaaataatatatttcattgtacTGAATgtgataaagaatttaattcatcGGAAGACTTAGAAAATCATAAATCAACccattctaatattaaattaaaattatatcgatGTTTAGGatcaaattcatataaaactataacagATTTTTCTAATTCGCCAACATTTTCGTGTCAGTtttgtgataaatattttatttcggaaGACGAACTAAACGAACATGCAgctattcataataataataaaaaatcggtTCGactaagtttattaaaaaataaatgttcaatatgttcaaaagtatttaaacaaaattcagatctagtcaaacataaaaaagaagAACATAATATtccaagtaaaataaaaaattctgacCCAGATTATACACCGAGCAGCTCAAGAGAGCATTCACATAGCGATGAAAATATGGTTACATCTTCAGATTATATTAAATCCGAGCcaatagattattttgaaataaaaaaagaattagatgaaaatttgtttatgtgTCCGACTTGTAAAAAAGTCTGTACAACCGAAAAAGGTTTATTACttcattcaaaaatacatatcCAAAGAATTCATAACGATGTTGATTCATTAAAATGTCAGGTTTGCCCGGAgcactttgaaaatattgaattattattagatcATTTAAAATCTCATTCAACAAAATCGTTacataatatgtttaatttaaaaaataatcacgtAAATGTGACCCAATCTGAGAAAGTTGATAAATCAGGTTTACATAAATGTCCCGATTGTCCTAAAAGGTGCTTAACACAAAACGCATTGACGAGCCATATAAGATTTAAACATCCTAaatcaaaacataataaaaaacctataaattttttccattgtaaaatttgtaacaaatcATTTGATAACCaaccaaatttaaacaaacatttaaaaatgcacGCCAAACATGACAGAACAGAAAAGAAATTTAGATGTAAAGAATGTCCAAAAAGATATGTATCTGAATTATCATTATCAGTACACGCtaaaactcatttaaaaaattattgtagccTATgcgataaaagttttataagttCCGGTGCTTTTAGATCACATAAAGGTTGGCATTTTCGTTCTGAATTTTGtagtaaaaaattgttaaattgcaaatatgaTTCAAAAGatgaacttttaaaaattgttaaacaagaaaaagatCAATTGCATtgtgaattttgtttaaaagaattcgttagtgaaaaattattactaaaacaTGTTAAAGCCACTCATCCTcaagaaacaaaaactaaatcgaaaaaatataagaaaaaaattaatccttACACAATTATAAAGACTGAAAAATCAGATGCGCCATCTGAAAAAGTATATAGATGTATGGAATGTAATACAGCTTTCCATAAAGCTAAAGATTTAAGGTCTCATATATTAGCATCACATCCTTTTAAcatcgaataa
Protein Sequence: MEQVVIRNYNSVCRLCLCEDDYNMISIFDETRIFLPQRIAACVNVEVRTTDLMPTTICKQCLNKVDDWFEFKQRCDDSQAKLRYWSDVPSTNNKQIYQTGLQIKEEPEAEEQTDLNILSNIKVEPIDTYDYEEQEEIEIIEHLDLTSPYESFFEDEISIDDSLLIPTLELPSNVHGLDAPVNKKPFIEMTNGNLNISQSNYCRICNRYFTKYSNRLRHERSVHCLDLDNLTCERCDDIFTNEAELVTHSKIVHAEYNNIDNLSPTNDIIDSSVELTTCTSYNDPMSSCQIASTAKKSTKKVSHAPFIKFANKLRLLRENSHDSEPVHLQSFISFHNRIKKIINDLTCDICEKKSATRKNIMNHLLKTNIINRYTCYSCFVTMPNRSEFMKHVAKRICKQRARAIKNNPSQAHMNFICEFCNNINVHITHIKSHLKSHIIKPCPESCEKCLLYFQSDDEYSEHISGPCFYKIYCSICEKRFISESDFNSHSIIHQDSNINKENFDFLDEADTPEYWANKCVVCLKDFSSSGNLKRHYKNLHPKYKIQTCQYCNRDFKNTTDLLGHIEKMHSNTDQSYESSNNFSCVQCGSLFDTLNMWCEHQKTHLANNIFHCTECDKEFNSSEDLENHKSTHSNIKLKLYRCLGSNSYKTITDFSNSPTFSCQFCDKYFISEDELNEHAAIHNNNKKSVRLSLLKNKCSICSKVFKQNSDLVKHKKEEHNIPSKIKNSDPDYTPSSSREHSHSDENMVTSSDYIKSEPIDYFEIKKELDENLFMCPTCKKVCTTEKGLLLHSKIHIQRIHNDVDSLKCQVCPEHFENIELLLDHLKSHSTKSLHNMFNLKNNHVNVTQSEKVDKSGLHKCPDCPKRCLTQNALTSHIRFKHPKSKHNKKPINFFHCKICNKSFDNQPNLNKHLKMHAKHDRTEKKFRCKECPKRYVSELSLSVHAKTHLKNYCSLCDKSFISSGAFRSHKGWHFRSEFCSKKLLNCKYDSKDELLKIVKQEKDQLHCEFCLKEFVSEKLLLKHVKATHPQETKTKSKKYKKKINPYTIIKTEKSDAPSEKVYRCMECNTAFHKAKDLRSHILASHPFNIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -