Pcha019815.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- NEEE01003816.1:17396-18895[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00022 0.02 15.6 2.0 1 23 117 140 117 140 0.92 2 12 2e-07 1.7e-05 25.2 2.6 1 23 151 173 151 173 0.98 3 12 3e-07 2.7e-05 24.6 2.3 1 23 179 201 179 202 0.96 4 12 0.0002 0.017 15.8 2.7 1 23 208 230 208 230 0.98 5 12 9e-05 0.008 16.8 0.7 1 23 243 265 243 265 0.97 6 12 3.7e-05 0.0032 18.1 2.5 1 23 270 292 270 292 0.97 7 12 3.3e-05 0.0029 18.2 1.8 2 23 298 319 297 319 0.97 8 12 0.0001 0.0089 16.7 1.6 1 23 324 346 324 346 0.96 9 12 0.00048 0.043 14.5 0.9 2 23 353 376 352 376 0.93 10 12 1e-05 0.0009 19.8 2.8 1 23 382 404 382 404 0.96 11 12 4.4e-05 0.0039 17.8 2.7 1 23 410 432 410 432 0.98 12 12 8.6e-05 0.0076 16.9 1.1 2 23 439 461 438 461 0.95
Sequence Information
- Coding Sequence
- ATGGAACTTACGGAACTTAcagatgataattttattattaataataaattaaatatatgtcgGGCTTGTTTAACTTCAAATAGTacattagttaatttatttgataacaaaGATGTAAATTCCTTACCTTTAAGAAATCTTTTCAATGAATGCACTTCACTACAgtctgATACCGATGATGGCTTACCACCTTGCTTGTGCACGGATTGTGCTAGACTGAcacaacaatttattaattttaaacaaatgtgcCTCAAATCGGATAGTAAATTacgcaatttattaaaagaactaCCTaaaataaattcaacagaaacaaataaaataaactcaaccaaaataaataaatatatttgtgatttatgtcatttaacattttctaaCAAACAAACGTTACAAACTCATAATAAAGATgctcataataaaataaaaccggCAGAAATTTCATCTTTCGAATGTAAAGAATgcaaaaaatcatttcaaagtaaaagtaatttaacgcGTCATACTTTAATCCATAATAATATACGGTCATACCAATGTTCAGAATGTAACACATCGTTTGTTCAAAACGTTCAACTTAAAGATCATATTCGCAGACATCACACTTTCGAAAAACCATTCAGTTGCAATCAAtgcgataaaaaatattatttaatgaaagacTTAAAGCGTCATTTAAATTCACATATTTTAGAtactaaagataaaattattgataataaatatatttgtggaACTTGTAACGAAAGTTTTAATTCAGAAAATGACTTAAAAactcataaaattaaacattttacggATTATTTTTCGTGTAACGAATGTGGTAAAAAATTTACGACAAAACgtggtttaaaatttcatcaagAATCgcataaagaaaaaacaattgaatgcgttcattgtaataaaacatttgcatCAGAACGACATTTAgcgttacatttaaaaattcatgaaccaaaaaattatctttgcaGTTTATGtggtaataaatattctacgaAACatggtttaaatttacatatgaaTATACATTCGGACGAACGCCCTTTagtttgtaattttgaaaattgtactaaaacatttaagtttaaaaatagtttgaatctTCATATTTTAGCTCATACGGGCgagaaaaattatgaatgtgATGAATGCGGGAAAAAATTTGCTCAAAGTGggcatttgttttatcataaacaatttcataGCGGATTAAAACCTTACAATTGTTcgttttgtaataaatcattcgcaattaaaactaattacaatTCTCATATTAAAAGACATAGAAGAGATAAATCTTTAATGTGTGATTTATGCAACGAAAGCTTTTTTGATTTAAgtacattaaataaacataagaaaaaagtacattaa
- Protein Sequence
- MELTELTDDNFIINNKLNICRACLTSNSTLVNLFDNKDVNSLPLRNLFNECTSLQSDTDDGLPPCLCTDCARLTQQFINFKQMCLKSDSKLRNLLKELPKINSTETNKINSTKINKYICDLCHLTFSNKQTLQTHNKDAHNKIKPAEISSFECKECKKSFQSKSNLTRHTLIHNNIRSYQCSECNTSFVQNVQLKDHIRRHHTFEKPFSCNQCDKKYYLMKDLKRHLNSHILDTKDKIIDNKYICGTCNESFNSENDLKTHKIKHFTDYFSCNECGKKFTTKRGLKFHQESHKEKTIECVHCNKTFASERHLALHLKIHEPKNYLCSLCGNKYSTKHGLNLHMNIHSDERPLVCNFENCTKTFKFKNSLNLHILAHTGEKNYECDECGKKFAQSGHLFYHKQFHSGLKPYNCSFCNKSFAIKTNYNSHIKRHRRDKSLMCDLCNESFFDLSTLNKHKKKVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -