Pcha015378.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- NEEE01007892.1:1-2629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.0014 19.2 0.7 2 23 21 43 21 43 0.97 2 12 2.5e-05 0.0022 18.6 0.0 1 23 49 72 49 72 0.96 3 12 0.0079 0.69 10.7 1.9 2 23 79 101 78 101 0.96 4 12 2.2e-06 0.00019 21.9 0.8 2 23 105 127 104 127 0.97 5 12 7.1e-06 0.00063 20.3 1.4 2 23 269 291 268 291 0.97 6 12 6e-07 5.3e-05 23.7 2.2 1 23 297 320 297 320 0.97 7 12 2.6 2.3e+02 2.8 6.3 2 23 327 349 326 349 0.96 8 12 5.5e-05 0.0049 17.5 1.0 2 23 353 375 352 375 0.97 9 12 5.7e-06 0.0005 20.6 6.1 2 23 427 449 426 449 0.96 10 12 7.7e-06 0.00068 20.2 0.1 1 23 456 479 456 479 0.96 11 12 0.00057 0.051 14.3 1.8 2 23 486 508 485 508 0.94 12 12 0.00084 0.074 13.8 0.3 2 22 512 532 511 532 0.96
Sequence Information
- Coding Sequence
- AAAAATTCCGaagataatttagataaagtaTCAGAACCTAATTTCAAGAAATGGAGCCGTCAGTGTAAAATTTGTGCAATAACATTTAGTAATACCGTTAACTTGAAAAGACATTATCAAACAATTCACAAAAATGAACATCCATACGCATGCGATAAATGCGATAAAACTTATCCAGGCTGGGCTTCTCTCCAGTATCATATCCAAATTgtacatttgaaaaattttaaaaacaagtgtCACGTTTGTTGGAATGTGTATGCGAACAATGAACGacttcaaaaacattttaaaagagtACATCCGGATACAACTTGCAATATCTGTAatcaagtttttaaaactacaaatGCGTTAGAAAATCACATGAAAACAGAACATTCTGATCACGATCGTCAAGATGAAGAATCAATTCATTCTGGAACTGATTCAGCTccagaatttaaaatgatcgAAAATTTAGAAGTTGATGTCAAAATGGAAATAGACATAGAAGatgataaagttttaaatgaaaaaacttcaaatatttatcctgttaaaacaataattcctAGTGACGTTGAAATTCCCGGATTAGaaactcaaaataatatcACTAAGATCGAATCAGTGCTACCAACTGAAACCACTTACAATGCTGAATTTACAATTGATTCTGTATCAGGAAATATAGAAGAACATTCAAACATTGGAACTGAAGATAATACAGTTCCCGATGTTTCACAAACTGATATCCAACCAAATTTAGacgATAGTTCAGATGACTCATCAGAATATCCTGATTTCAAAGAATGGGGCCTCCAatgtaaaatttgttcaaaaacatttactaCTACCCCTAACGTGAGAAGACATTATCAAACAGTTCACAAAAAGGAACGTCCATACTCATGCGACAAATGCGATAAAACTTACACCACCAAGAAAGCTCTCCAGCATCATATCCaaattgtacatttaaaatattttaaaaaaaggtgtCATATTTGTTGTGCAGTGTTTGCGAAAAAAAAACGACTACgacaacattttaaaagagTACATCCGGATACAACTTGCACAATCTGTAAccaagtttttaaaactataaatgtgTTAGAAAAtcatatgaaaacaaaacattctGATCGCGATCGTCAAGATGAAGAATCAATTCATTCTGGAACTGATTCAGCTCCAGAATCTAAGTTGAtcgaagatttaaaaaaagatGAAAGCACAGACGATAGTTCAGATGACCCATTagattattcttatttaaaagaatgggGCTGCCAatgtaaaatttgttcaaaaacaTTTAGTACTATCCATAACTTGAGAAGACATTATAGAATACTTCATAAACATGGACGACGTCTATACGCATGCGACAAATGCGATAAAACTTACACCGGCTGGGCTTCTCTCCAGTATCATATCCaaattgtacatttaaaaaatgtaaaaaacaagTGTCATATTTGTTGGAGAGTATTCGTGAACAATGAACGTCTTCAACAACATTTTACAAGAGTACATCAGGCAACAACTTGCACAATCTGTAACCAAGTTCTTAAATCTACAAAAGCGTTAGAAAATCATATGAAAACA
- Protein Sequence
- KNSEDNLDKVSEPNFKKWSRQCKICAITFSNTVNLKRHYQTIHKNEHPYACDKCDKTYPGWASLQYHIQIVHLKNFKNKCHVCWNVYANNERLQKHFKRVHPDTTCNICNQVFKTTNALENHMKTEHSDHDRQDEESIHSGTDSAPEFKMIENLEVDVKMEIDIEDDKVLNEKTSNIYPVKTIIPSDVEIPGLETQNNITKIESVLPTETTYNAEFTIDSVSGNIEEHSNIGTEDNTVPDVSQTDIQPNLDDSSDDSSEYPDFKEWGLQCKICSKTFTTTPNVRRHYQTVHKKERPYSCDKCDKTYTTKKALQHHIQIVHLKYFKKRCHICCAVFAKKKRLRQHFKRVHPDTTCTICNQVFKTINVLENHMKTKHSDRDRQDEESIHSGTDSAPESKLIEDLKKDESTDDSSDDPLDYSYLKEWGCQCKICSKTFSTIHNLRRHYRILHKHGRRLYACDKCDKTYTGWASLQYHIQIVHLKNVKNKCHICWRVFVNNERLQQHFTRVHQATTCTICNQVLKSTKALENHMKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -