Basic Information

Insect: Pogonus chalceus
Gene Symbol: -
Assembly: GCA_002278615.1
Location: NEEE01008020.1:5416-7824[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.057 5.1 8.0 0.5 2 23 184 206 184 206 0.94

2 13 0.00011 0.0097 16.6 1.2 1 23 237 259 237 259 0.98

3 13 0.00063 0.056 14.2 3.1 1 23 265 287 265 287 0.98

4 13 2.5e-07 2.2e-05 24.9 1.5 3 23 295 315 293 315 0.98

5 13 4.9e-05 0.0044 17.7 0.3 1 22 321 342 321 345 0.90

6 13 7.1e-08 6.2e-06 26.6 0.7 3 23 408 428 407 428 0.99

7 13 4.7e-06 0.00042 20.9 2.8 1 23 434 456 434 456 0.99

8 13 1.9e-06 0.00016 22.1 1.8 1 23 462 484 462 484 0.97

9 13 9.6e-06 0.00085 19.9 2.3 2 23 490 511 490 511 0.98

10 13 8.9e-06 0.00078 20.0 2.5 1 23 517 539 517 539 0.96

11 13 4.5e-07 3.9e-05 24.1 2.7 1 23 545 567 545 567 0.99

12 13 1.2e-05 0.0011 19.6 3.1 1 23 573 595 573 595 0.98

13 13 0.00021 0.018 15.7 3.0 1 23 606 629 606 629 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.057	5.1	8.0	0.5	2	23	184	206	184	206	0.94
2	13	0.00011	0.0097	16.6	1.2	1	23	237	259	237	259	0.98
3	13	0.00063	0.056	14.2	3.1	1	23	265	287	265	287	0.98
4	13	2.5e-07	2.2e-05	24.9	1.5	3	23	295	315	293	315	0.98
5	13	4.9e-05	0.0044	17.7	0.3	1	22	321	342	321	345	0.90
6	13	7.1e-08	6.2e-06	26.6	0.7	3	23	408	428	407	428	0.99
7	13	4.7e-06	0.00042	20.9	2.8	1	23	434	456	434	456	0.99
8	13	1.9e-06	0.00016	22.1	1.8	1	23	462	484	462	484	0.97
9	13	9.6e-06	0.00085	19.9	2.3	2	23	490	511	490	511	0.98
10	13	8.9e-06	0.00078	20.0	2.5	1	23	517	539	517	539	0.96
11	13	4.5e-07	3.9e-05	24.1	2.7	1	23	545	567	545	567	0.99
12	13	1.2e-05	0.0011	19.6	3.1	1	23	573	595	573	595	0.98
13	13	0.00021	0.018	15.7	3.0	1	23	606	629	606	629	0.95

Sequence Information

Coding Sequence: atggataatacaactttaaatgaattagGTTTAGGTAAAGTGTGTAGAGCGTGTTTATCCGATGAAGGCGAAATGAAATCGGTATTTAGTGAATGTACTGAtaatacagatattaaaatatttaaaatgttcgagTGTTGTACCGCTGTTgagGTTTCAGAAAATGATGGTTTGCCGGAATTAATTTGTGTACAATGCGAGTTAAGGTTAACATTAGCATATAATTTTAGAGAATTGTGCCAAAGATCTAACACAACACTTAGAACTTATATAGAAAACGCAACACGATATACAGTCAAAGAAGAAACTCAAatcgaagaaaaatatattatagaaacatACGACGAAACAATAAAAGATGAAAACGTATTTGAATctgaacaaaatgaaatagaaaaatctGAAATTGAATCAAATCATGATAATAGTAATGATTCGGATGATACACCATTATCAAGGAGGCgagataaatcaaataaacctCATTTTGCTAATGAAATAGTTAACCAAGCTATTGATGCaactaaaaaaaagtttaacgaAAAACGACAATgtaaaatttgttcttttgtATCAACTAATGCGAGAGGACTTTCATTGCATATAGCACATTTACATAAagaaataaaaaatagatggtGTAGCACATGTGAAGAAGAAGTAGATGATTTACCAAATCATATCAAAGAACATAATAAAACGCGTTCATACGCTTGTACGTTTTGtgaaaaagcatttttatctCAAGGACATTTAACCGAACATATTCGTAGCCAttctatggATCGTccatttaaatgcaatttatgtACAAAAAGGTTTTTATCTGCAAGACATTTGAGAGTCCACGAACGCGTTCATTCTGGTGAGAAACCTTTCGGCTGTCCTCATTGCGGCCGAAGGTTCACCCAAAAAGGTTCATTACAAGGCCATATTAGGACTCATACTGGACTTAAGCCGTTCCAATGTGAGatatgcaataaaaaatttacaacaggAAGTGCTTTAGCAATGCATAGAGCTAAAACCgctcataataaatttgttaaaatagtgTTACCAAAATTAGAAGttgatataaatgaaattaaagaatttccGGAAACAACTGAAGATGAAAATGTAGAAGAACCGACGaaattcgAAGATCCTCTTGCTGATCCAATTTTACCTCCAACAACTGCAACTTCATCAGTTGATAAAGAATCTTTACGAAAACTTTGTACAGTTTGCGGAAAAACATTTAGTACAGCTTCGAAATTACGGTTACATATGAGAGTTCATACCGGTGAGACTCCATATAAATGTCAATTTTGTACGAAACAATTTACAACGCGTGGACAATTAGTGGTACATACTCGGACTCATACCGGTGAGCGTCCACATGTTTGTCATGTCTGTGGGAAAGGTTTTGCACAATCAAGTGTTTTAAATACACATATGAAATTGCATACTGGCCGGCCGGAACAATGTCAAGTTTGTGAACAACGGTTTTGTAGACCAGCGGAATTGCGGTTGCACATGCGCAAACATACagGAGAGAAACCATATTTATGTACTGAATGCGGTCATTCATTTATCCAACGAAGTCATTTAATGGAACATGTAAAAATTCACAGCGACGAGAGACCTTATAAATGCCATTTATGTGAACGCGCCTTTAAACAAAGCTCAAGCCTTAAATCTCATATTCAAATTCATACTGGTTATAAGCCTTATAAGTGTTCACAATGTCCTTATGCTTGTCGGCAACCTTATAGTCTTACACAACATATGAAACAACATAGCGCAGATCAACCACAACCTGATAGACCTCATATTTGTCTTGTTTGCCATAAAACTTTTACTACTTTAGCCATGTTAACATCTCATTCAAGAAGTGTACATCAagccattttttaa
Protein Sequence: MDNTTLNELGLGKVCRACLSDEGEMKSVFSECTDNTDIKIFKMFECCTAVEVSENDGLPELICVQCELRLTLAYNFRELCQRSNTTLRTYIENATRYTVKEETQIEEKYIIETYDETIKDENVFESEQNEIEKSEIESNHDNSNDSDDTPLSRRRDKSNKPHFANEIVNQAIDATKKKFNEKRQCKICSFVSTNARGLSLHIAHLHKEIKNRWCSTCEEEVDDLPNHIKEHNKTRSYACTFCEKAFLSQGHLTEHIRSHSMDRPFKCNLCTKRFLSARHLRVHERVHSGEKPFGCPHCGRRFTQKGSLQGHIRTHTGLKPFQCEICNKKFTTGSALAMHRAKTAHNKFVKIVLPKLEVDINEIKEFPETTEDENVEEPTKFEDPLADPILPPTTATSSVDKESLRKLCTVCGKTFSTASKLRLHMRVHTGETPYKCQFCTKQFTTRGQLVVHTRTHTGERPHVCHVCGKGFAQSSVLNTHMKLHTGRPEQCQVCEQRFCRPAELRLHMRKHTGEKPYLCTECGHSFIQRSHLMEHVKIHSDERPYKCHLCERAFKQSSSLKSHIQIHTGYKPYKCSQCPYACRQPYSLTQHMKQHSADQPQPDRPHICLVCHKTFTTLAMLTSHSRSVHQAIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -