Basic Information

Insect: Pogonus chalceus
Gene Symbol: su(Hw)
Assembly: GCA_002278615.1
Location: CM008236.1:1746033-1751165[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00034 0.03 15.0 0.9 2 20 147 165 147 167 0.94

2 13 0.095 8.4 7.3 0.1 1 23 202 225 202 225 0.91

3 13 1.2e-06 0.00011 22.7 2.0 1 23 229 251 229 251 0.98

4 13 0.00025 0.022 15.4 1.4 1 20 256 275 256 277 0.93

5 13 1.6e-07 1.4e-05 25.5 0.5 1 23 288 310 288 310 0.98

6 13 6.9e-06 0.00061 20.4 1.0 1 23 320 342 320 342 0.99

7 13 6.5e-06 0.00057 20.4 0.9 1 23 348 370 348 370 0.98

8 13 1.6e-05 0.0014 19.2 1.1 1 23 376 398 376 398 0.99

9 13 9e-06 0.00079 20.0 3.5 1 23 404 426 404 426 0.95

10 13 2.8e-05 0.0025 18.4 1.6 1 23 432 455 432 455 0.94

11 13 7.4e-06 0.00065 20.3 0.3 1 23 461 483 461 483 0.95

12 13 8.7e-07 7.6e-05 23.2 2.8 1 23 489 511 489 511 0.98

13 13 3.5e-07 3.1e-05 24.4 1.8 2 23 518 540 518 540 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00034	0.03	15.0	0.9	2	20	147	165	147	167	0.94
2	13	0.095	8.4	7.3	0.1	1	23	202	225	202	225	0.91
3	13	1.2e-06	0.00011	22.7	2.0	1	23	229	251	229	251	0.98
4	13	0.00025	0.022	15.4	1.4	1	20	256	275	256	277	0.93
5	13	1.6e-07	1.4e-05	25.5	0.5	1	23	288	310	288	310	0.98
6	13	6.9e-06	0.00061	20.4	1.0	1	23	320	342	320	342	0.99
7	13	6.5e-06	0.00057	20.4	0.9	1	23	348	370	348	370	0.98
8	13	1.6e-05	0.0014	19.2	1.1	1	23	376	398	376	398	0.99
9	13	9e-06	0.00079	20.0	3.5	1	23	404	426	404	426	0.95
10	13	2.8e-05	0.0025	18.4	1.6	1	23	432	455	432	455	0.94
11	13	7.4e-06	0.00065	20.3	0.3	1	23	461	483	461	483	0.95
12	13	8.7e-07	7.6e-05	23.2	2.8	1	23	489	511	489	511	0.98
13	13	3.5e-07	3.1e-05	24.4	1.8	2	23	518	540	518	540	0.97

Sequence Information

Coding Sequence: ATGATAGATCGGTTGACCACATCGCAGGGGCGTAGAtactcaaataatttaaacatgtcCGAAGACAGTAAAGGAGAAATCAAACAGGAATTCCTGGATATTTCTAACATGAAAGGGGAAATAGTTGAAGAAACTATACTTTCAGACGAATTATCTgggaaaacaataaatatcgaAGATGCTGTATTTATCTCCGACCATACAGACTCGTCTGTTGTCATTTTACGAAATAGTGATGATAGTACATTGTTAGAAACCGTATCAGATACAAACAATGTTGTTGTTGTGGCGAGTGTTTCAAGTAACGGGGAGTTAATAACCACAGATTCCATGGAAATAATTGAAGAAGGAGGTGATGTTAATAATTCAGGTGAAATAACCGAAAATGACATAAGTACTGATAAAGATAATAGTGTTGAAGAACCATTGGATCCAAATACTTGCAGATTTTgtagaaaaacttttaaatcacaAACGGGCCTTAAGCGTCATTTAATCGCTTGTCAACCTGAACCAGAAGATGACGACCTGGACGACCCGCTCGCGTTTGAAATATGCCATTGCTGCGGAGAACCCGTCGATACCGCTCATAAAGTCGGTGATTACCCATGCGAAAAGTgcgataaattattcattgctGAATCCGTTCGTGAAAGACATAATCGCATTGTCCATTGCGATGGATTTACATGTCCAGATTgcgataaaaaatgtaaatcacGACAAGATttggaaaaacatattatcaTGCATATGGAAAAACCGTTTGCTTGCTTCCGATGCAATAAGATATTCACCAGGAAATATCATCTTGATCGACATGTTGCGCAAACTGGATGCGATGGAAAGCCGAGAGAAGTTTTTAAATGCCAgGTTTGCGATAAAGGATTCGCGCGTCGCGATAATCTTCGTGAGCATTTACGCGCTCATGCTGGTCAAGTGAAACGTAAAAAGGTATTCCAGTGTTCAGTCTGCAAAAAAGAATTCCACGGCGCTGCTTTATTGCAAATACATATGCGAACACATAcagGTGAACGACCCTTCCAATGTACAATGTGTCCGAAACGTTTCCCATCAAGTGGAGCTATGAAGAAACACTCCCGCATGCATACTGGTGAGCGCCCGTACGAGTGCAGTGAATGTCATGCCCGTTTCGCAGCTAAAGAAACCCTTAATCGTCATGTCCGTACGCACACCGGTCATAAACCGCATTCTTGTCAATTTTGCGGTAAAAGTTTTATCCAAGCATCACAATTACGGGCGCATATTTTCCATCATACTGGCGAAAATGGTTTTACTTGTGAACATTGCGGAAAAGCGTTCAATAGACGGGCCAGACTTGTGACCCATGTGAAATTTATTCACGAAGGGGCGAAACCGTTTGAGTGTGATACTTGCTCCAAAACGTTTGTAAGGAAAGAAGATTTGGCAAGACATGCTATCTTACACAGCGGAATTAAACcGCATGAATGTCCAATATGCCACAAGGCATTTGCAATGAAATCATCATTGAAAACTCATTTGAATACTCATCGCAAAGAACAGCCACGTAGCTGTGATGAATGCGGGCGTGCCTTTATCCGCCAGGATTGCTTAATCCGCCACATGCGTACAAAACACCGAGACATGTTGGAAGACATTTTAGCCGGTGCCGAAAAGAAACGATTACAACAACAATTACTTGCGGCAGCCTCAGAAGCAATGTCTGAAAGTAAACCAAGCATTTCAGAAacacaagtttggaatgaattGACTTTAACCGATTCCATTAAAGAGCTATTGACTTTACTGGTCGATGACGCAACTTTACAAGCATTTGGATGGCCTGATACTCCAGTTGATAAACTATTGGATTCCGTGATACGTAGATGCGGGCATAAACCTGCACCTGAGGatgaatttgattatattgGACGTTTGCGAGAGaatgcaaaattattattcactgTTGTAATTGATGATTCAGCTGTTAAATCTCTACTTAACAACCAAACTGTTGATGAAGTCGTTCTACATGTTCTGCGTTTAGCAAAAGCTGAATAA
Protein Sequence: MIDRLTTSQGRRYSNNLNMSEDSKGEIKQEFLDISNMKGEIVEETILSDELSGKTINIEDAVFISDHTDSSVVILRNSDDSTLLETVSDTNNVVVVASVSSNGELITTDSMEIIEEGGDVNNSGEITENDISTDKDNSVEEPLDPNTCRFCRKTFKSQTGLKRHLIACQPEPEDDDLDDPLAFEICHCCGEPVDTAHKVGDYPCEKCDKLFIAESVRERHNRIVHCDGFTCPDCDKKCKSRQDLEKHIIMHMEKPFACFRCNKIFTRKYHLDRHVAQTGCDGKPREVFKCQVCDKGFARRDNLREHLRAHAGQVKRKKVFQCSVCKKEFHGAALLQIHMRTHTGERPFQCTMCPKRFPSSGAMKKHSRMHTGERPYECSECHARFAAKETLNRHVRTHTGHKPHSCQFCGKSFIQASQLRAHIFHHTGENGFTCEHCGKAFNRRARLVTHVKFIHEGAKPFECDTCSKTFVRKEDLARHAILHSGIKPHECPICHKAFAMKSSLKTHLNTHRKEQPRSCDECGRAFIRQDCLIRHMRTKHRDMLEDILAGAEKKRLQQQLLAAASEAMSESKPSISETQVWNELTLTDSIKELLTLLVDDATLQAFGWPDTPVDKLLDSVIRRCGHKPAPEDEFDYIGRLRENAKLLFTVVIDDSAVKSLLNNQTVDEVVLHVLRLAKAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -