Pcha009499.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- ZNF131
- Assembly
- GCA_002278615.1
- Location
- CM008230.1:1118156-1125264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.3 27 5.8 1.1 1 22 269 290 269 293 0.87 2 17 0.0014 0.12 13.1 0.7 2 23 300 320 299 320 0.95 3 17 8.4e-05 0.0074 16.9 0.7 1 23 326 348 326 348 0.96 4 17 6e-05 0.0053 17.4 3.2 1 23 354 376 354 376 0.98 5 17 1.6e-06 0.00014 22.4 1.9 1 23 382 405 382 405 0.96 6 17 0.00029 0.025 15.3 3.7 1 23 434 456 434 456 0.98 7 17 0.00016 0.014 16.0 0.0 1 21 461 481 461 482 0.90 8 17 0.01 0.89 10.4 0.0 5 23 482 500 481 500 0.93 9 17 1.6e-06 0.00014 22.3 0.9 2 22 507 527 507 527 0.95 10 17 0.0028 0.24 12.2 2.4 1 21 743 763 743 767 0.92 11 17 0.31 27 5.7 1.6 2 23 776 796 775 796 0.95 12 17 0.00026 0.023 15.4 0.6 1 23 802 825 802 825 0.95 13 17 2.3e-06 0.0002 21.9 1.4 1 23 833 855 833 855 0.99 14 17 3e-05 0.0027 18.3 1.1 1 23 872 894 872 894 0.94 15 17 0.0018 0.16 12.7 0.2 1 23 899 921 899 921 0.94 16 17 4.7e-06 0.00042 20.9 0.4 1 23 927 949 927 949 0.96 17 17 8.7e-06 0.00077 20.0 0.5 2 21 956 975 956 976 0.95
Sequence Information
- Coding Sequence
- ATGTCTAGTGATTCTAGTATAACTGTAgataagtttcaaaaaatttgtagAACTTGCATGTCTGAAGGAATTATGGAACCATTATTTGAAACTTGTACAAAAGATGTatgtttaatagaaaaaataatgtcCTGTACCTTTATacagATAAAAGAAAACGATGGCTTAccagtaaatatttgtttaaattgcgtaaaagaaataaatcaagCTTATTTATTCgctaaaaaatgtgaaaactCCGATAAAATCTTACGAAAATGTTTATCAGAAGATTCAAATCAAACTTACGTCgaacttattaaaaacactGATATATTATCATTAGAAAACACATCGAAAAAGCCAAAAGTTAAAGTTACACCAGTACGCGGTGAAACAAAAACGCGCGCAAGTTCAGATACTCAACAAATACAACCAATagaagataaacaaaatattgaagaaaagaaaataaaagatgaaatatCATTAgacgaatttaataatattgatcaaaatttatcttttgattATGTTAAACTCGAAACAACTAAAACAGAATGCGATGATTTTTCTGattcaaatgataataatgatGATTTAAATGATGATACTGATTATGTACCAGATAAATCTGATGTTGATGAAACAGAAACATATAAAGAAacacattatattaaaagaagtgatagaaaaaataataaaaatgatgagaATAATTGGGATGATGATTTTTCATGGAATGTTGATAGTCCATCGGAGAAAAAAGAAgtgaaaacaaagaaaaaacgaCGCGGCACGCCGCGGCGGCAAGGTCCGCcgtttatttgtaaaagatGTGATATAACTTTTCAgaCACACGAAGAAATAGTCGAACATCGTACAAAAGTTCGACATTACCCTCCTAAAAATAAACCCTGCCCTGTTTGTGAAAAATTATTCACAACATGGAAATTAAAATCACATATGCGAACACATACAAAAGAACGGCCATATTTATGTTCGTTTTGCGGAAAAGGTTTTACTTTAGATACAAATTTACGCCGGCATTTAATGATACATACTGGAGAGCGTCCGCATAAGTGCCATTTATGTGAAAAGGCGTTTATTCAAATGACACAATTACAAGATCATTTGCGGGTTCATTCCGGCGAGACACCTTTCGTTTGTAGTGTTTGCGGTAAAAGCTTTAAACAACCGTCAGTATTAAGACTTCATATGAAACATAAACATAGTGGCGAAGGTGAAACTGTTGATAAAAGAAAACGAGAagtttcagcAACTAAATCAAATATAGATCCAAATGCAATACCTGAACATGAGTGTCCTACGTGCAATAAAAGATATCATACAAAAGCTGTTCTTAATCAACATATGCTTACACATGGtgaaaaacgatttttatgcAGTGATTGTGGTAAAGGTTTTATCAGTAAAGCTAGTCTTCAAGTGCATTCTAAGGTGTGCGGGAAAGCATTCAGCCAGATGGGGTCCCTACAAATGCATAATTTAATACACACTGGAGAGAAGCCTAATGTTTGTCTCGTTTGCAATAAATCATTTACCCAACCATCACACTTAAAGTACCATATgagaacTTGTTTATGTAAAGGAGAATTAAAACCTTTGTATGAAAATTGTGAGGAACAAGaatgtttaattgaaatgttaatGGCATGTACTTTAGTACAAtttacaaAAGATGATGGTTTACCAGTacaaatttgttcaaattgtataaaagaaataaaacaagcaTATTCATTTGCAAAACGTTGTGAAAATGCAGATACAGTTTTAAAAAGATgtataaaacagtttaaaaataaactaaaaaaaaataaatccgaaacaaaattaacatcAGAAACAAGTGAATCTGTTGTAAGTCAAGAACCTGAAAATATAGAAGTTAAACCCGAAATACTTATCGACGATTTTAAACTTGAACAAGAAAACGAAGAATTTTCCGACGCGAAAGTAGAAATAGTTATTACAAAACAAGAATATCAAGAAGAATATGTAATTGAAGATGACGACGATTATATAGGTGATGACTTTGATGACGATGAAAAAGATTCTGATTTTGAACCATTTGAAAACGAAgaagaaaaatctaaatttaaaaaaactagacTTTCAAATTCTTCTTTGAATTTAGATGATTCAGGGGATGAACCTAACTCGACGGTACCACCCAAAAAgcgaaataaacttttaaaacttaagtCAAAACCTCCATATTATGAATGTAAGAAATGTTTTGCTAAATTTTCTGATTTTTCTGGTCTTAAAAAACATCGACTTGAAACTAAACATCCACCTAATGCCTATAAACCTAGTCCGTGTCAtgtttgcaataaaatgattGGTTATCGATTAATGAATCAACATATGCGTACACACACTGGGGAGAAGCCCTATTGTTGTGAAATTTGTGGAGCAAGTTTTAGCGTAGGAGGAAATCTTAGTAGACATAAAAGAGCTAGGCATTCTGCTCCTGATGATAGGATGTATCAGTGCCAAACGTGCGAAAAAAGTTATAAGAgattagatttattaaaaattcatcaaaGAATACATTCTGGTGATAGAAAACCTAAACCACCCAATCAAATTTTAACCAGAGATTTTAAATGTGATCAATGCGATCGAGCTTTCACTACAAAAAGATTATTGAGGCAACATTCGGTTATTCACggagaaaaaacatttttatgtagTGTTTGCGGTCGCGGATTTGTTAGTAAAGTTTTATTGGATTCACACTCTaaggTACATACCGGTCTTCGGCCGTATAGTTGCAAAGTCTGCGGAAAAGCTTTTAGTCAGCTTGGTTCTCTAAAAACGCACAATTTAATACACACTGGCGAGAAACCAAATGTTTGTACTGTTTGTAATAAAGCTTTTACACAGCCTAATcacttaaaatatcatatgcGtttagaacttaatattttaaaaaatgtttataatatatcgtttttttatttgcataaaaatccATGGTTATGTAGTAAAtctttatgtaatttaattaataccgCAATTACTAATAATTGGTTACATGGGTATATTCCGAATTGTCTTTATCGGAATAATACTAAAATGTCGTGGAatgatagaaatataatagaatttccaaatattgatgtttataataaaccagataaaaatattatgttgttAACATGTGAAATAACAACATTTTGTTATGAACCAAAAATGCAATGGGTTTTCGaagattctttaataaataacagcaTTTTTTGGAACTCCGATGATatgtattctttaaatatagtattaaataatttaactaaagaaACGGAAGGTATTTACACATGTCTTATTGACGATTATAAATatgtaactACTATGATATCTATACCCACAaatcaaagtataaaaaacgaaatttataaaaaaggaaatGAAACTGGAGTCAGTTTTGATGCTGATTTGAAACCACCTgatgtagattttagtttagATTTAGGATTCGTTTTAGGAGTATTTATTGGTACAATAATAACTTCAGTGTTTTTTTGTGCgaaaaactattttaaaataagtaaattattctgttgttttaaaatatgcaagtGCAGAAAAAGCAAtagaaattcaaatgaaatgcaACCTTTAGAATCATCTAATTCAGGAACTTTAGAAGTTAATTCGacaaatgcaattaattaa
- Protein Sequence
- MSSDSSITVDKFQKICRTCMSEGIMEPLFETCTKDVCLIEKIMSCTFIQIKENDGLPVNICLNCVKEINQAYLFAKKCENSDKILRKCLSEDSNQTYVELIKNTDILSLENTSKKPKVKVTPVRGETKTRASSDTQQIQPIEDKQNIEEKKIKDEISLDEFNNIDQNLSFDYVKLETTKTECDDFSDSNDNNDDLNDDTDYVPDKSDVDETETYKETHYIKRSDRKNNKNDENNWDDDFSWNVDSPSEKKEVKTKKKRRGTPRRQGPPFICKRCDITFQTHEEIVEHRTKVRHYPPKNKPCPVCEKLFTTWKLKSHMRTHTKERPYLCSFCGKGFTLDTNLRRHLMIHTGERPHKCHLCEKAFIQMTQLQDHLRVHSGETPFVCSVCGKSFKQPSVLRLHMKHKHSGEGETVDKRKREVSATKSNIDPNAIPEHECPTCNKRYHTKAVLNQHMLTHGEKRFLCSDCGKGFISKASLQVHSKVCGKAFSQMGSLQMHNLIHTGEKPNVCLVCNKSFTQPSHLKYHMRTCLCKGELKPLYENCEEQECLIEMLMACTLVQFTKDDGLPVQICSNCIKEIKQAYSFAKRCENADTVLKRCIKQFKNKLKKNKSETKLTSETSESVVSQEPENIEVKPEILIDDFKLEQENEEFSDAKVEIVITKQEYQEEYVIEDDDDYIGDDFDDDEKDSDFEPFENEEEKSKFKKTRLSNSSLNLDDSGDEPNSTVPPKKRNKLLKLKSKPPYYECKKCFAKFSDFSGLKKHRLETKHPPNAYKPSPCHVCNKMIGYRLMNQHMRTHTGEKPYCCEICGASFSVGGNLSRHKRARHSAPDDRMYQCQTCEKSYKRLDLLKIHQRIHSGDRKPKPPNQILTRDFKCDQCDRAFTTKRLLRQHSVIHGEKTFLCSVCGRGFVSKVLLDSHSKVHTGLRPYSCKVCGKAFSQLGSLKTHNLIHTGEKPNVCTVCNKAFTQPNHLKYHMRLELNILKNVYNISFFYLHKNPWLCSKSLCNLINTAITNNWLHGYIPNCLYRNNTKMSWNDRNIIEFPNIDVYNKPDKNIMLLTCEITTFCYEPKMQWVFEDSLINNSIFWNSDDMYSLNIVLNNLTKETEGIYTCLIDDYKYVTTMISIPTNQSIKNEIYKKGNETGVSFDADLKPPDVDFSLDLGFVLGVFIGTIITSVFFCAKNYFKISKLFCCFKICKCRKSNRNSNEMQPLESSNSGTLEVNSTNAIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -