Pcha006917.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonus chalceus
Gene Symbol
-
Assembly
GCA_002278615.1
Location
CM008233.1:6598132-6601280[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0023 0.2 12.4 1.9 2 23 156 177 156 177 0.98
2 15 2.9e-05 0.0025 18.4 1.2 2 23 184 205 183 205 0.97
3 15 1.1e-05 0.00099 19.7 5.3 1 23 214 236 214 236 0.97
4 15 4.7e-05 0.0042 17.7 5.1 1 23 317 339 317 339 0.97
5 15 0.0018 0.16 12.8 1.8 3 23 361 382 359 382 0.95
6 15 0.0004 0.035 14.8 9.8 1 23 451 473 451 473 0.97
7 15 0.00026 0.023 15.4 1.3 1 23 479 502 479 502 0.95
8 15 2.4e-06 0.00021 21.8 0.9 1 23 507 529 507 529 0.98
9 15 1.8e-06 0.00016 22.2 4.2 1 23 541 563 541 563 0.97
10 15 4.7e-08 4.2e-06 27.2 1.3 1 23 570 592 570 592 0.98
11 15 2.1e-05 0.0019 18.8 1.6 3 23 604 624 602 624 0.92
12 15 0.00029 0.026 15.2 4.1 1 23 630 652 630 652 0.99
13 15 8.8e-06 0.00078 20.0 1.8 1 23 658 680 658 680 0.96
14 15 2.4e-07 2.1e-05 24.9 0.3 1 23 686 708 686 708 0.99
15 15 0.00017 0.015 15.9 0.1 1 23 714 738 714 738 0.92

Sequence Information

Coding Sequence
atgattaataaagataatgtATTGTCCTTGGACAAAATGTGCCGTTCTTGTATGGTTGAAGGTAATCAAATGCGATCAGTTTATGATACCAACACTGATTCTTCGGTACAGCTTGCGGAAATGATAATGGCTTGTACTACTGTGCAGgtCATTTCGGGGGATGGTTTACCACATTCGATATGTGTTAAATGCGAAGAACAATTAAATGTTgcttatgtttttaaacaacaatgcGAACGTAGCGATGCTACGTTAAGAGAATACGCAAGTACATTACCCGATCAAATTAAAGAAGAATCAGAATCATTAGATATTGTTGTTAAACCAGATATTGATGTTTTATACGATGATAATGATGATAACGGACGGGAAGATGATGATGAACCGTACAATTCAGGTTCAGAAAGTGAACACAGTAATTATTCAACAACAAAACGCAGGAAAAAGAAATCACCGAAAAATCGACAATGccgattttgtaataaaatgttatctaCAAAAGAAGGACTTAGATTACATGAAAGGCGACATAcaggagaaaaactaaaaagttGTCCTGTATGTCAAGCAACATTTGCtaaatcaaatcatttaattcGACACATGTCTATGCATAATAAACCAACAGATGAATACAAACACACATGTGAAGAATGTGGAATGGGATTCACACGGGCATCTCATTTACATAAACACCGACGCGAACATAAAGCTGATACATCATCGAAGGAGGAAAATTTAGATGATAGCGTATCTACCTCTGTAATAAACACTTCAACAGCAACTACAGATGGAAGTGCGGATCAAGAATCCATGGATATAGAAACTCCAACAGCAACTGTTAAAAGCGAAGTGGATAGCGATGGTGGTGAAACTAGTACAGGAATGAACACGCGACATGCGAAGCTACGCCCAAAGAAAGAACCTCTAGATATCATTGATAAACTTCATCCTTGTAAGatttgcctaaaaacatttacaaaattaaaccaTTTAAGCCGGCATATGTTAACACATGGCGTATCATctcataaaacaacaaaagataaaaatgaaccgaaagaaaagaaatatatggCATGTGAATTTTGTGATAGAAAATTCGTGTATAAGAAAAGTTTCTTACACCACATACAATTGGAACATCAAATTTCGGAAGATAGTGATACACCGTTAAGTGAATACGccacaataataacaaaaccgAAAGGAGATTCATCCGGACAGTTGAATTTATCTGGTGAAAACGGTAGCGCCGAAGGCGCTGATGGCGAACAATTATCCGGAGCTGGAGTACCTGGAAGCGATGATTTCGCTGAGTTTATGAGACAGGAAGAAGCGAAAAAAGTACACACATGCCATGTATGCAATCATAAATTTACCCGAGCGAATCATTTAACAAGGCATATGACATTGCATCGTGCTGTGCTCGTCCATAAATGTGATCGATGCGAGAAAGCATTTATGACACCGGAACATTTAGCAGCACATGTTCAAGAATTCCATGTTGAAAAGCCATATGTATGTTCACTTTGTAATAAACCTTTCAGTCGAGGTGAACACTTAATTCGCCATTTAAAAGTACATGATAAAGAATCCGGGGGTGCAAGTACTGACGAGCATAAATGTAGTATATGCGAGAAAGTATTTTCACGGTCGGATCATCTAGCCCGTCATACGAAGCTTCATTTGGCCCAGGACAAACGGCACGTGTGTAACGAATGTGGCAAAGCATTTAATCGTTTAGATAATTTGCGCACACATCAGCGTATTCATACTGGTGTTCGCGATCCACAGCGCttacatttatgtatttattgcgGTAAAGAGTTCAACAACAGCAGTAATATGATTGTACACATGCGCAGACATACCGGCGAACGCCCCTACAAATGCGCGCAATGCGGTAAAGGATTCCCTCGCTCACATGATCTCAAATGCCATGAACGAACACACAGCGGTGAAAAGCcatatttatgtacattatGCGGTAAATCattcaataaaagtaataaattattacgacATACGCGTGTACATACCGGAGAACGCCCTTACGTGTGTTCGTTATGCGGACGAGCTTTTACACAATCAAACGATTTGGCGCTTCATATGCGGCGACACACCGGTTCACGGCCTTACGCTTGCGGTATGTGTCCAGCGCGATTTATCCAGTCAGGGCAGTTAAAAGCACATAGGCGTTCGCAAGGACATTGGCTTGAAACTCAACCGGAGCTTAAAGGAGCACACCGAGTGACACCTGTTACACCATTAGTAAATCCCCctccaattaaatttaaaactcgaATACAACGAATAAAAGAAGAACCAAATATTCTTGGACATACAATTGGTGTTGGTGTAAGTGGATTAGCAAGTGTTGTTGCAGCTGCGGCTGCAGCCGCAGCTGCAGCTGCATCTAAAGAACAACAGCAACTTGGTGGTCAAAATAGTGCAGGAAATACAGGAACAAATGCTGTTGCTGTAAGCAATAACAGTAATAGTGATACAGTTGGAGTAGGTGCTAGTGAAAATGTGACTTCACCGTTTTATGTACCTCAACGCGAACAGCAGcagcagcaacaacaacaacaaaaggaaaatatgaaattagatGATGTACATAACTTTAGTGTAACAAATTTAAGTCGTGATGCCTCAACGACAGctgttgtaaataattcagtGACAAGCCCGTTTCACCAGCAGCCAACAAGTGTTAGTGTTGAGCCTGGTACTTCGTTTACTATGACACCAACATCATTTGTTGTTAGTGAAGCGTATAATACGTATCAAACGTATGGTTAA
Protein Sequence
MINKDNVLSLDKMCRSCMVEGNQMRSVYDTNTDSSVQLAEMIMACTTVQVISGDGLPHSICVKCEEQLNVAYVFKQQCERSDATLREYASTLPDQIKEESESLDIVVKPDIDVLYDDNDDNGREDDDEPYNSGSESEHSNYSTTKRRKKKSPKNRQCRFCNKMLSTKEGLRLHERRHTGEKLKSCPVCQATFAKSNHLIRHMSMHNKPTDEYKHTCEECGMGFTRASHLHKHRREHKADTSSKEENLDDSVSTSVINTSTATTDGSADQESMDIETPTATVKSEVDSDGGETSTGMNTRHAKLRPKKEPLDIIDKLHPCKICLKTFTKLNHLSRHMLTHGVSSHKTTKDKNEPKEKKYMACEFCDRKFVYKKSFLHHIQLEHQISEDSDTPLSEYATIITKPKGDSSGQLNLSGENGSAEGADGEQLSGAGVPGSDDFAEFMRQEEAKKVHTCHVCNHKFTRANHLTRHMTLHRAVLVHKCDRCEKAFMTPEHLAAHVQEFHVEKPYVCSLCNKPFSRGEHLIRHLKVHDKESGGASTDEHKCSICEKVFSRSDHLARHTKLHLAQDKRHVCNECGKAFNRLDNLRTHQRIHTGVRDPQRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCAQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCSLCGRAFTQSNDLALHMRRHTGSRPYACGMCPARFIQSGQLKAHRRSQGHWLETQPELKGAHRVTPVTPLVNPPPIKFKTRIQRIKEEPNILGHTIGVGVSGLASVVAAAAAAAAAAASKEQQQLGGQNSAGNTGTNAVAVSNNSNSDTVGVGASENVTSPFYVPQREQQQQQQQQQKENMKLDDVHNFSVTNLSRDASTTAVVNNSVTSPFHQQPTSVSVEPGTSFTMTPTSFVVSEAYNTYQTYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-