Pcha017205.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonus chalceus
Gene Symbol
-
Assembly
GCA_002278615.1
Location
NEEE01003804.1:30627-35119[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00045 0.039 14.7 1.6 1 23 247 269 247 269 0.99
2 16 4.3e-05 0.0038 17.9 1.6 2 23 291 312 290 312 0.97
3 16 4.6e-07 4.1e-05 24.0 1.8 1 23 318 340 318 340 0.98
4 16 5.9e-05 0.0052 17.4 5.9 1 23 346 368 346 368 0.97
5 16 3.3e-05 0.0029 18.2 5.1 1 23 374 396 374 396 0.96
6 16 1.7e-07 1.5e-05 25.4 3.1 1 23 402 424 402 424 0.98
7 16 2e-06 0.00018 22.0 0.8 3 23 432 452 431 452 0.99
8 16 3.4e-05 0.003 18.2 0.2 1 23 458 480 458 480 0.98
9 16 1e-06 9.1e-05 23.0 2.4 3 23 488 508 486 508 0.95
10 16 4.2e-05 0.0037 17.9 3.2 1 23 514 536 514 536 0.97
11 16 3.1e-06 0.00028 21.4 4.4 1 23 542 564 542 564 0.98
12 16 9.2e-06 0.00081 20.0 6.4 1 23 570 592 570 592 0.98
13 16 0.0068 0.6 10.9 5.9 1 23 598 620 598 620 0.96
14 16 4.3e-06 0.00038 21.0 6.9 1 23 626 648 626 648 0.98
15 16 0.00022 0.019 15.7 1.0 3 23 656 676 654 676 0.95
16 16 8.3e-06 0.00073 20.1 4.6 1 23 682 704 682 704 0.97

Sequence Information

Coding Sequence
atgttttatttatcatccttttgttgtatttgtttaaacgATGGTGAAGAATtacatagtttaaataatacagaCGCAGATAATGTGCAATTGGtggaaaaattaaagttttgtgCTTTTGGAACGGAATGGATAGATCAAGAAATACCAGTGTTTATCTGCAATCCATGCAGCAGAAGTTTGCATATTGCTTAcgaattcaaaaaaatatgtataaaaaacaacgaACGATTAAAAGGTTATATATTACATCTAAAAGGTACACAAATTCCAATACATCCCCACTCCGGTCTTCAAATGCTTCAACCAAACGATAAACCGCCAATGCTCAACAATGATTTCcgtgaatatttttcaaaagctAAAGAACCTTGCACTGGCTTATACCCAGACATGCACGTTAAATTAACCGACGATAGACTTGGtttacaaaatgatttatCAAATCCAGCTAATAGTTACGTACCACCAATGTGTATGCCACAAGCTCCAATAAATGTACCTCCAAATCCTATGCAACCGTGCGTcggaattaaaaatgaatatacaaCAATACCAGCTATTACCACTGTTTCGATTGCAACTCAAACTGACCCGATGCTTCCTGATATTTCAAATCGCGATGATGTTAAAAACGAATATTCAAGTTTGGATGATGATTTCAATAACGATGATAATTTAGATAACAATGATGAATCAGATTCTAGAAGTCAAGACGCAAGTCCTGATcgcgaaatatataaatgccaTTTATGTAACGCTAAATAcgcgaaaaaaatattattagcttCCCATTTAAATACCCACAAAGGAAATGTTCCTAAAAAATCAAGCCCGACAAATGAAGACATTATAGACACGAAATCGAAAATGTGCACTTTTTgtaacaaacaatttattcGAATTTCGGATTTAAAACGCCATGCTATGACACATACCGGTGAGAGACCACACCAGTGCCCTAACTGTGATAAGAGTTTCATACAATTGACTACTCTTAAGGATCATATGTTAACACATACGAAAGTTCGAGCTCACTCTTGTAATTTGTGTGGGAAATCGTTTACTCTTAAACGAACGTTGCATAAACATCTTTTAACTCACACAGGACAAAAATTGCATCATTGTACTATgtgtaataaaagtttttcggAAAAATCGACGCTTGAAAAACATATCTCGCTACATTATGGTTTAAAACCGCACCAGTGTTCTTACTGTGGGAAAAAGTTTGCGGAAAAGTCCAATATGGAGAAGCATATGATGACACACACAGGAAACAAGCCGCACGGATGCACAGAGTGCACAAAACGTTTCATAACAAAATCAGCCCTAAAACGCCATTTAATGGTCCACTCAGGCGAACGTCCATTCACTTgtgaaatttgcaataaaagttTCATCGAGAAAATCGTCCTCGAAAACCATTTATTAACCCACTCAGGCCAGAAACCACATTTATGCAGCCAATGCACCAAATCATTTGTTACTAAATCCGCACTAAATCGTCATATGATGATACACACCAATGAACGTCAACATAGATGTATGCATTGCACGAAgagttttataactttatccGCGCTTAACAATCACGTTGCCACCCATACTGGGGAAAAGAAACACGAGTGTACTTTGtgccataaaaaatttatacaaaaaggtaatttacaattacatATGTTGACTCATACGGGCGAACGAAGACATCAGTGTAATCAATGCCATAAGAACTTCGCGAGAAAATCTGACTTGAAGTTACATTATATGACACACACTGGGGAGAAGTTACACCATTGTGCTCAGTGTGGCAAAAGCTATATTCATCTGTTATCGTTTAAGAATCATATGTTATCGCATACAGgtGAGCGGCCACATAAATGTACTTATTGCACTAAAACGTTTACCCAACGTCCGCATCTTAAACGCCATTTAGCAACTCACACCGGCGAGCGGCCGCACTTGTGTTCAGCATGTGGTAAATCCTTTGCAGAGAAATCTACATTGGATACTCATCTTTTGACGCATACAGATCAAAAACCACATGTGTGTCCTCATTGTAACAAaggatttacaaaaaaattcgcCCTCAAACGACATGTTATGCGACATAACAGCGAACGCATGGATTTCGTATTCACTCATTGA
Protein Sequence
MFYLSSFCCICLNDGEELHSLNNTDADNVQLVEKLKFCAFGTEWIDQEIPVFICNPCSRSLHIAYEFKKICIKNNERLKGYILHLKGTQIPIHPHSGLQMLQPNDKPPMLNNDFREYFSKAKEPCTGLYPDMHVKLTDDRLGLQNDLSNPANSYVPPMCMPQAPINVPPNPMQPCVGIKNEYTTIPAITTVSIATQTDPMLPDISNRDDVKNEYSSLDDDFNNDDNLDNNDESDSRSQDASPDREIYKCHLCNAKYAKKILLASHLNTHKGNVPKKSSPTNEDIIDTKSKMCTFCNKQFIRISDLKRHAMTHTGERPHQCPNCDKSFIQLTTLKDHMLTHTKVRAHSCNLCGKSFTLKRTLHKHLLTHTGQKLHHCTMCNKSFSEKSTLEKHISLHYGLKPHQCSYCGKKFAEKSNMEKHMMTHTGNKPHGCTECTKRFITKSALKRHLMVHSGERPFTCEICNKSFIEKIVLENHLLTHSGQKPHLCSQCTKSFVTKSALNRHMMIHTNERQHRCMHCTKSFITLSALNNHVATHTGEKKHECTLCHKKFIQKGNLQLHMLTHTGERRHQCNQCHKNFARKSDLKLHYMTHTGEKLHHCAQCGKSYIHLLSFKNHMLSHTGERPHKCTYCTKTFTQRPHLKRHLATHTGERPHLCSACGKSFAEKSTLDTHLLTHTDQKPHVCPHCNKGFTKKFALKRHVMRHNSERMDFVFTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-