Basic Information

Insect: Pogonus chalceus
Gene Symbol: -
Assembly: GCA_002278615.1
Location: CM008237.1:3874152-3876439[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.9 7.9e+02 1.1 0.7 5 17 13 25 12 26 0.89

2 15 0.00087 0.077 13.7 1.4 1 23 99 121 99 121 0.97

3 15 6.2e-06 0.00055 20.5 3.1 1 23 122 144 122 144 0.97

4 15 0.00017 0.015 16.0 1.2 2 23 151 172 150 172 0.96

5 15 4.8e-05 0.0043 17.7 0.2 1 23 201 223 201 223 0.98

6 15 0.0035 0.31 11.9 0.8 1 23 229 251 229 251 0.94

7 15 4.1e-06 0.00036 21.1 1.9 1 23 257 279 257 279 0.97

8 15 1.4e-05 0.0012 19.4 1.4 1 23 288 310 288 310 0.96

9 15 1.5e-05 0.0014 19.3 0.1 2 23 317 338 316 338 0.95

10 15 6.7e-09 5.9e-07 29.8 2.6 1 23 344 366 344 366 0.99

11 15 5.9e-08 5.2e-06 26.9 1.2 1 23 372 394 372 394 0.98

12 15 2.1e-06 0.00018 22.0 0.7 1 23 400 422 400 422 0.99

13 15 5.8e-06 0.00051 20.6 0.7 1 23 428 450 428 450 0.94

14 15 6.1e-08 5.3e-06 26.8 0.0 3 23 458 478 457 478 0.98

15 15 4.9e-06 0.00043 20.8 2.9 1 23 484 506 484 506 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.9	7.9e+02	1.1	0.7	5	17	13	25	12	26	0.89
2	15	0.00087	0.077	13.7	1.4	1	23	99	121	99	121	0.97
3	15	6.2e-06	0.00055	20.5	3.1	1	23	122	144	122	144	0.97
4	15	0.00017	0.015	16.0	1.2	2	23	151	172	150	172	0.96
5	15	4.8e-05	0.0043	17.7	0.2	1	23	201	223	201	223	0.98
6	15	0.0035	0.31	11.9	0.8	1	23	229	251	229	251	0.94
7	15	4.1e-06	0.00036	21.1	1.9	1	23	257	279	257	279	0.97
8	15	1.4e-05	0.0012	19.4	1.4	1	23	288	310	288	310	0.96
9	15	1.5e-05	0.0014	19.3	0.1	2	23	317	338	316	338	0.95
10	15	6.7e-09	5.9e-07	29.8	2.6	1	23	344	366	344	366	0.99
11	15	5.9e-08	5.2e-06	26.9	1.2	1	23	372	394	372	394	0.98
12	15	2.1e-06	0.00018	22.0	0.7	1	23	400	422	400	422	0.99
13	15	5.8e-06	0.00051	20.6	0.7	1	23	428	450	428	450	0.94
14	15	6.1e-08	5.3e-06	26.8	0.0	3	23	458	478	457	478	0.98
15	15	4.9e-06	0.00043	20.8	2.9	1	23	484	506	484	506	0.97

Sequence Information

Coding Sequence: atggatatagaaacttataattttaatttcgaaacAACATGTAGAACATGTTTATcaacaaattcaaatttaaaatcgttaaatgatgaatctattattaatttattaaaaatgtgtcAATTTATTCagattccAGAAATCGATGAATTACCTTCAAATATATGTGAACAATGTATTACACAAATAACACAATGTGTTAAGTTTAAAGAACAATGTGATAAATCGGAAAAAGTATTACAATCGTAtctagaatataataaattaaataatcaacaagatgaaaaaattgttgaacATGTATGTAGTATTTgcaatgaaaaatttgaaacggAACAAGAAGTTAAAACACATTTATCGAAACATTACGTTTGTATTCATTGTGAAAAATCGTTTTCtaattcGCAGATGTTAAAACGACATATAAAAACACATATGgaatctaatttattaatgtgtaataaatgtaataagaaATTCGTTGATAGTACAGTTTATAATCAACATTTATTAACACATAGtgaaaaaatagaagaaaatttaaatagtccATCATCtgattttactaattttcttGATGAGGCTCCAAGTTCACCTTTAGCGTTTTCTTGTACGGAATGCAGCCAATCTTTTAGCGTTCCTGAAGATTTAGAATTACATAAAGCAACTCATACTACAAATGgggaatatatttgtattaaatgcaataaacaatttgctgcTAGACAAGTATTGAAACGACATATTAAAACACATATGACACATAAACCACATGTATGCAAAGAATGTGGGAAAGGTTTTGCGGAATCCCATGCCCTTACGAAACATGCTAGAAGACATGCTGGATTACCTCGAGAGAAGAAACATTTTTGTCAAGTCTGTGGACAAGGaTTCACAGagcctttttatttaaacgtcCACATGAGAAAACATACAGGGGAGCGTCCATTAATGTGCGCAACTTGTGGTAAATCATTTGCAGATCCAAGATCTCTTAAAGCTCATAATATGATACATACAGGCCAACGTCCTTTCAAATGCCACATATGCAAcAAAGCTTTTACCCAAAGTGTTAATTTAACGAAACATATTCGTGTTCATACTGGGGAGCGTCCTTATATATGTTCAGAATGTGGTAAATCTTTTACTCAATCTTCAAGTTTGGATAAACATTCAAGAACTCATAGTGGAATTCGTCCGTATCCATGCACTGAGTGTCCTAAACGATTCGCGGAACGAGGTACTTTGGTACATCATTTACGTACACATAGTGGAGAGAAACCCTACGTTTGTGCGCATTGTGgtaAAGCATTCGCAAGTTCAAGTGAATTGAAGTTGCACGATCGACGCCATTCtggaattaaaatgaatatttgtccAGTTTGTGGAAAAGATTTTGCAACGCCAAGTAATTTAGTGATTCATATGAGATCGCATACTGGTGAGAGGCCATTTTGTTGTGATTTTTGTGGGAAAGCGTTTGCTGATAAAGGTTCCTTGAAGAAACATACGAGTAGACATGTAAAAGTTAATGCTAATGGTGCAGGAGGTAAAGATATGGTTGAAGCTGCTATGAGTGGATTAGGAATGGAAGaaagatattttgatttaagttaa
Protein Sequence: MDIETYNFNFETTCRTCLSTNSNLKSLNDESIINLLKMCQFIQIPEIDELPSNICEQCITQITQCVKFKEQCDKSEKVLQSYLEYNKLNNQQDEKIVEHVCSICNEKFETEQEVKTHLSKHYVCIHCEKSFSNSQMLKRHIKTHMESNLLMCNKCNKKFVDSTVYNQHLLTHSEKIEENLNSPSSDFTNFLDEAPSSPLAFSCTECSQSFSVPEDLELHKATHTTNGEYICIKCNKQFAARQVLKRHIKTHMTHKPHVCKECGKGFAESHALTKHARRHAGLPREKKHFCQVCGQGFTEPFYLNVHMRKHTGERPLMCATCGKSFADPRSLKAHNMIHTGQRPFKCHICNKAFTQSVNLTKHIRVHTGERPYICSECGKSFTQSSSLDKHSRTHSGIRPYPCTECPKRFAERGTLVHHLRTHSGEKPYVCAHCGKAFASSSELKLHDRRHSGIKMNICPVCGKDFATPSNLVIHMRSHTGERPFCCDFCGKAFADKGSLKKHTSRHVKVNANGAGGKDMVEAAMSGLGMEERYFDLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -