Pcha008743.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonus chalceus
Gene Symbol
ZNF236
Assembly
GCA_002278615.1
Location
CM008230.1:12938966-12946432[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.056 4.9 8.1 2.4 1 23 153 175 153 175 0.96
2 25 2.5 2.2e+02 2.9 0.4 1 23 181 203 181 203 0.81
3 25 1.1e-05 0.001 19.7 0.3 2 23 209 230 209 230 0.98
4 25 0.0052 0.46 11.3 0.1 1 23 236 258 236 258 0.98
5 25 2.2e-05 0.002 18.7 2.7 2 23 272 293 271 293 0.96
6 25 0.00019 0.017 15.8 3.2 1 23 318 340 318 340 0.98
7 25 3.5e-07 3.1e-05 24.4 0.7 1 23 346 368 346 368 0.98
8 25 3.2e-05 0.0028 18.3 2.3 1 23 374 397 374 397 0.97
9 25 0.0073 0.64 10.8 4.1 1 23 407 430 407 430 0.96
10 25 4.5e-06 0.0004 20.9 0.8 3 23 515 535 513 535 0.96
11 25 5.3e-07 4.6e-05 23.9 2.0 1 23 541 563 541 563 0.98
12 25 1.8e-06 0.00016 22.2 2.2 2 23 570 591 569 591 0.97
13 25 0.0019 0.17 12.6 5.6 2 23 597 618 596 618 0.92
14 25 0.017 1.5 9.7 4.6 1 23 667 690 667 690 0.94
15 25 0.0003 0.026 15.2 3.5 1 23 696 718 696 718 0.99
16 25 1e-06 9e-05 23.0 1.4 1 23 724 746 724 746 0.98
17 25 0.031 2.7 8.9 1.5 1 23 752 774 752 774 0.98
18 25 0.31 27 5.7 4.2 2 21 1121 1140 1120 1141 0.91
19 25 5.6e-09 4.9e-07 30.1 0.7 2 23 1235 1256 1234 1256 0.98
20 25 0.00012 0.01 16.5 2.2 1 23 1262 1284 1262 1284 0.97
21 25 5.2e-05 0.0046 17.6 1.2 1 23 1290 1312 1290 1312 0.98
22 25 0.00091 0.08 13.7 2.3 1 23 1318 1340 1318 1340 0.98
23 25 0.00014 0.013 16.2 2.5 2 23 1491 1512 1490 1512 0.96
24 25 5.4e-06 0.00047 20.7 3.4 1 23 1518 1540 1518 1540 0.98
25 25 6.2e-05 0.0055 17.4 1.1 1 23 1546 1569 1546 1569 0.98

Sequence Information

Coding Sequence
atgaatataGGTAGTCCCATTCCAATTATAACAAACCATGACAATGAGCCTGTAACTTTAATTGCTGTTCCACTACAACTATTTCAACAAGCAACGCAACAACAATCCTTTATAGTagaacaaaatgttttatttaatactcttCCTAATGGAACAATAGTAATTGATACAAATCAGcttttaaataatgacaatAACTGTGATATTACTACTACAACTGATGTAAATAGCAATAATGAAAACTCTGACTTTATATTAACAGTTCAACAAAAAgatgataatttaataaCCAATGAATCAAATATATCAAACACAAATAATGCgacaaaaaaagaagaaaaaaatacatctaaaattcgttatttaaataataaaactttagatATCCGTAAAGTCGGAAGACccaaaaaagatatttcaaagttaaataattccGATcctgaaaataaaggtccgtttatatgtaaatattgtaaaaaggAGTTTGATAAATGGTTGATATTTAAAAGACATGAAAAATCTCACATGaatgagaaaaaatataaatgttcttTATGCCCATCATCCTTTAACATACTTataaatcatGTCTTGCATATAGCAACACATAATACAGATGACCCTAAATGTCCTGAATGTGGTAAAAAGTTCCAAAGAATAGCAAGCTTAAAAGCTCATATTATGTACCATGAAAAagaagaaacattttattgtgaagattgtgatatattatttgataatgatgttgAAATGAATGAACATATTAAAACACATGGACAAGAGAAagagaaaaaagaaagaatagataatttaaagtgTAAATATTGTCAATTAACATTCACCGAACaatcaagttttaaaaaacatatgatGGAACATAATAagATGAgacatattttacaaagtcCAATTCGTAAAAAACCTAAAAGGTCTGGCACAATTGAACGTAAACACCAATGTAATTCTTGTTCAAAAGCTTTTCAAAAAAGAAGTCAAATTGAAAGGCATATGCGAGTTCATACCGGTGAAAAACCGTTTGTTTGTAAGATTTGTAATAAAGGGTTTAGTCAAAAAGGTTCCCTTCAAATTCATATGTCTCGGCATACAGGAAATAAGCCACATAAGTGTACTTTATGCCAAGCTAAATTCACTCAAAAAgGAAATTTGCGtgctcatattttaaaaactcattCAGTCCCACATGAAGGAGAGAACGTTTATTGTTGCACCGAATGTTCTTGCGTTTTTAAACGATTGGGAAGTTTAAACGGACATATAACTCGCAATCATCCGAAGGataaaaacaatgatttaaaatatgttttatcacAATTATCCGCTATACAAAGCAGTATGAGTAATATCGATAATGATATACTACAACAGGCTATCAATAAATCGGACATACCAGgacaaaatattgaagaacCGCCCGACTCCCCTTCAGCAATATATGTTACATTAGCTGGTTCAGGGTTAGATGGTAATATGCGCAGATATGTTATCAAACAAAGAAAAGTTGGTGATATAAGATGGCATTTATGTTCCTTATGTccgaaagaatttaaaaaaccatCGGATTTGGTTCGTCATATTCGGGTGCATACCCGAGAGAAACCATTCATGTGCAAATATTGTGGTCGGTCATTCGCTATAAAATCTACATTAACAACTCATATGAAAACACATATGAAATTAACGAAAGTAGAATGTAAATATTGCCACAAATTTTTCAGTTCTTGGAATAGTTTAAATGCACATATGctaaaacataCCGCACCAAAGCAAAAATGCCAAGTATGTAACAAATCTTATCGATCTAAATCGCAGTTAAATCAACATTGTAAAAACCACTCAGCGGAATCATCAGCATATTATAAGGAACCAAATAGTAATACAATTATGCTGCAACCAATACAAATAACAAGCAgaggaTTGGAACCTGTTTCATCTTTACGAAAACGACCAATTTTAGAAGCTGGTTGTAAAAGTCGTCCACATACCTGTAAAGTTTGCAGTGGAGCATTTCGGAAATTAAGTCATCttaaacaacattatttacttaaacatACTGAAGAGCGGCCGTATACGTGTTACCACTGCtttaggaaTTTTGGATCTAgtagtaatttatatacacatataGCTACCCATACCGGTATGAGACCATACAGTTGTTCAGTttgtaaaaaagattttacaaCAAATGGAAGTTTAAAACGACATATGGTAACACATAATCTTGATAAACCATTTATATGTCCTATATGTTTTCTGGATTTTAAAACTCTTCCGCAATgtaaaaaacatattgaaaCACATGCTCCAtctgatataaatatacatatggaAACAGACGACAATGTAGATACAAATGAATTAGTTGAtactgaaacaaatttaacttataattcaaatatagataataatttagttaattcttATACTGTAGTACAACCATTGAATAATACTAATTTAGAAGAAATACCAAAAAATGTTAcagataaaattgaaaattctacATCTTTATTATCATCTTccgtaaaagaaaataattcggttattttatctgttaaaCAGCAAAATTTACCTCAGggaaacattaatgaaattgaagatactttaaattctcaaatgttaaatattatagggagtgaaaattttgttgattcatctacatatgtaaataaactaGATGTATCTCAACCAATTGCTACTACAGATGAACTAGTTAACACACTCACAGGTTCCGCGGAACCtcagaaaaatattgttgataaCTCTTATCTATATCAACAGGTGATTGTGAACTTAAATCCAGACCCTGAGCAAATTcctatatttgataataatggGTTAGATAATATAGTTACGCAATTAAGGCTGcagaatgagtcattatttttaacagatttaAATTCACTTAATATGAATGAAACAAACAATGTATTATTGCCATTTCAAATAGCGCAACAACctgaaatacaacaaaatcaattaataatgctTCCAACAGAATTCGAACAAGAAATTCATACAACACCAATACAAAATACTGTAAATTTAGAGACAATAGATACAAgccttcaattaaaattaaataatatgaatagaatattaaattccGTACCTAATATAACTGACcctaatattgttataaatacaacACCAATTCAAACTgaaaacgaatttttaaatgttcaaaatattgaagaaaatattatatcaactCCTATAACGCAAATATCCTCATTATCGggcaaaaatattgaaaataatgtattaacaGAAGTTTTATGtaaccaaaaacaaaattctttattaataaataatgagaaaACTAGCGAAACAGTTTATATAGTTTGTAATATGtgtaaacaaaactttaaaactaaaaatgaattaaaatgccATCagtgtattaattatattaatattgaaattgcaaactctaatataaataataaaaataaaacaaaaccgaTAAATTCTCAAAACAACGAAGAAGgagttgtaaatttaaatatacaacttGAAAATTCTAATCGTACTGAAGTTGTTGATAATGGAGAaatggatattttaaatgtaaaagatAAGAATATTACACCAAAAGAGTTTCAGGAGTTCGTTGCAcgtaaaactaaaattgattcgcagaaaacaaatgaatctgTCGACCCCAAAGTAAAACATAGAAATCAATGTCCGTACTGTCCGAAAAGTTTTCGCAAACCTTCCGATTTACAACGGCATATTAGGACGCATACCGGTGAACGTCCATTTAAATGCACAGAATGTgataaaaagttttctttaaaatcaactttagacagtcataataaaatacatcaagGCAAAAAAGAATATGTTTGCATGGTATGCAATTGTTTCTTTGCTACAAATGGTAGTCTTACTGTTCATATGCGTCTACACACAGgaGTAAAGCCATTCAAGTGTCCTTtatgttcattaaaatttcgaaCATCCGGTCATCGTAAAGCTCATTTAACTGTACATTataaagaagttttaaaaaccgGTAAAATATCATCGGACGGAGTTGcgcgaaaaacaaaaatgtccgaattaatgaaaaaggttgaaaatatgataaattcaaatataaatgaggaacaaaataataaagatgataatgaaattgaattcaatttacaaaatataccaTTAGATCAGGAATTACCACTAGAATCATTTGTTGAAACAAGTTTAGAACTGCAGGCAGATGATAAACAATCGAACATGCATTAcgaaatagaaacaaatactGAGggtcaaataacaaatattaaaccaacagcatcaaatattttgtttattgatgAAACTTCGAAAAAGGAAGTAGTTTCAACTCAAGTTGATTTCGatgataaaacaaagttacaaattgaaaacttCCTTCGTgataaaaaagacaaaataagtgaatctaaaaataaaattaaaaaagtatgtaATATTTGCCATAAAGAATttagttcaaaatatttattagataggCATAGTAAAATACATACCGGAGAACGAATATTCTCGTGTGATTATTGTTCTAAATCgtttaaccaaaaaaatactttacaaaTTCATAAGCGGACACATTCCGGAACTAGACCATATTCATGCCCACATTGCGCGAATACATTTAGTCaaattggaaatttaaaaactcataTTAAACGaatacATAGTCATATAGAACAGTCACAACAAAATACAGATACGCTTTGCTcaggatttattattaatgatattacTGAAAATCTTCCTACATAA
Protein Sequence
MNIGSPIPIITNHDNEPVTLIAVPLQLFQQATQQQSFIVEQNVLFNTLPNGTIVIDTNQLLNNDNNCDITTTTDVNSNNENSDFILTVQQKDDNLITNESNISNTNNATKKEEKNTSKIRYLNNKTLDIRKVGRPKKDISKLNNSDPENKGPFICKYCKKEFDKWLIFKRHEKSHMNEKKYKCSLCPSSFNILINHVLHIATHNTDDPKCPECGKKFQRIASLKAHIMYHEKEETFYCEDCDILFDNDVEMNEHIKTHGQEKEKKERIDNLKCKYCQLTFTEQSSFKKHMMEHNKMRHILQSPIRKKPKRSGTIERKHQCNSCSKAFQKRSQIERHMRVHTGEKPFVCKICNKGFSQKGSLQIHMSRHTGNKPHKCTLCQAKFTQKGNLRAHILKTHSVPHEGENVYCCTECSCVFKRLGSLNGHITRNHPKDKNNDLKYVLSQLSAIQSSMSNIDNDILQQAINKSDIPGQNIEEPPDSPSAIYVTLAGSGLDGNMRRYVIKQRKVGDIRWHLCSLCPKEFKKPSDLVRHIRVHTREKPFMCKYCGRSFAIKSTLTTHMKTHMKLTKVECKYCHKFFSSWNSLNAHMLKHTAPKQKCQVCNKSYRSKSQLNQHCKNHSAESSAYYKEPNSNTIMLQPIQITSRGLEPVSSLRKRPILEAGCKSRPHTCKVCSGAFRKLSHLKQHYLLKHTEERPYTCYHCFRNFGSSSNLYTHIATHTGMRPYSCSVCKKDFTTNGSLKRHMVTHNLDKPFICPICFLDFKTLPQCKKHIETHAPSDINIHMETDDNVDTNELVDTETNLTYNSNIDNNLVNSYTVVQPLNNTNLEEIPKNVTDKIENSTSLLSSSVKENNSVILSVKQQNLPQGNINEIEDTLNSQMLNIIGSENFVDSSTYVNKLDVSQPIATTDELVNTLTGSAEPQKNIVDNSYLYQQVIVNLNPDPEQIPIFDNNGLDNIVTQLRLQNESLFLTDLNSLNMNETNNVLLPFQIAQQPEIQQNQLIMLPTEFEQEIHTTPIQNTVNLETIDTSLQLKLNNMNRILNSVPNITDPNIVINTTPIQTENEFLNVQNIEENIISTPITQISSLSGKNIENNVLTEVLCNQKQNSLLINNEKTSETVYIVCNMCKQNFKTKNELKCHQCINYINIEIANSNINNKNKTKPINSQNNEEGVVNLNIQLENSNRTEVVDNGEMDILNVKDKNITPKEFQEFVARKTKIDSQKTNESVDPKVKHRNQCPYCPKSFRKPSDLQRHIRTHTGERPFKCTECDKKFSLKSTLDSHNKIHQGKKEYVCMVCNCFFATNGSLTVHMRLHTGVKPFKCPLCSLKFRTSGHRKAHLTVHYKEVLKTGKISSDGVARKTKMSELMKKVENMINSNINEEQNNKDDNEIEFNLQNIPLDQELPLESFVETSLELQADDKQSNMHYEIETNTEGQITNIKPTASNILFIDETSKKEVVSTQVDFDDKTKLQIENFLRDKKDKISESKNKIKKVCNICHKEFSSKYLLDRHSKIHTGERIFSCDYCSKSFNQKNTLQIHKRTHSGTRPYSCPHCANTFSQIGNLKTHIKRIHSHIEQSQQNTDTLCSGFIINDITENLPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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