Basic Information

Insect: Pogonus chalceus
Gene Symbol: -
Assembly: GCA_002278615.1
Location: NEEE01002529.1:32997-35393[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0005 0.044 14.5 7.7 1 23 108 130 108 130 0.98

2 24 2.5e-06 0.00022 21.8 3.8 1 23 136 158 136 158 0.97

3 24 0.0031 0.27 12.0 3.6 3 23 166 186 164 186 0.95

4 24 3.5e-06 0.00031 21.3 1.3 1 23 191 213 191 213 0.97

5 24 0.008 0.7 10.7 6.8 1 23 219 241 219 241 0.98

6 24 2.8e-06 0.00025 21.6 0.8 1 23 247 269 247 269 0.98

7 24 1.1e-06 9.7e-05 22.9 3.0 1 23 275 297 275 297 0.97

8 24 8.7e-05 0.0077 16.9 1.6 2 23 304 325 303 325 0.97

9 24 1.3e-06 0.00012 22.6 2.8 1 23 331 353 331 353 0.98

10 24 7.2e-07 6.4e-05 23.4 2.7 1 23 359 381 359 381 0.98

11 24 1e-06 9e-05 23.0 0.8 2 23 388 409 387 409 0.97

12 24 6.5e-05 0.0058 17.3 0.7 1 23 414 436 414 436 0.98

13 24 0.0014 0.12 13.1 6.1 1 23 443 466 443 466 0.97

14 24 3.1e-06 0.00028 21.4 5.5 1 23 472 494 472 494 0.98

15 24 9.4e-06 0.00083 19.9 1.7 1 23 500 522 500 522 0.98

16 24 3.3e-06 0.00029 21.4 0.8 1 23 529 551 529 551 0.96

17 24 6.2e-07 5.5e-05 23.6 1.1 3 23 559 579 558 579 0.99

18 24 1.5e-05 0.0013 19.3 0.5 1 23 585 607 585 607 0.95

19 24 2.5e-07 2.2e-05 24.9 1.1 1 23 617 639 617 639 0.97

20 24 0.00061 0.054 14.2 1.9 1 23 645 668 645 668 0.97

21 24 0.0013 0.11 13.3 1.9 1 23 674 696 674 696 0.97

22 24 2.2e-06 0.0002 21.9 2.9 1 23 702 724 702 724 0.97

23 24 1.7e-05 0.0015 19.2 0.5 1 23 730 752 730 752 0.96

24 24 9.3e-06 0.00082 19.9 4.2 2 23 759 780 758 780 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0005	0.044	14.5	7.7	1	23	108	130	108	130	0.98
2	24	2.5e-06	0.00022	21.8	3.8	1	23	136	158	136	158	0.97
3	24	0.0031	0.27	12.0	3.6	3	23	166	186	164	186	0.95
4	24	3.5e-06	0.00031	21.3	1.3	1	23	191	213	191	213	0.97
5	24	0.008	0.7	10.7	6.8	1	23	219	241	219	241	0.98
6	24	2.8e-06	0.00025	21.6	0.8	1	23	247	269	247	269	0.98
7	24	1.1e-06	9.7e-05	22.9	3.0	1	23	275	297	275	297	0.97
8	24	8.7e-05	0.0077	16.9	1.6	2	23	304	325	303	325	0.97
9	24	1.3e-06	0.00012	22.6	2.8	1	23	331	353	331	353	0.98
10	24	7.2e-07	6.4e-05	23.4	2.7	1	23	359	381	359	381	0.98
11	24	1e-06	9e-05	23.0	0.8	2	23	388	409	387	409	0.97
12	24	6.5e-05	0.0058	17.3	0.7	1	23	414	436	414	436	0.98
13	24	0.0014	0.12	13.1	6.1	1	23	443	466	443	466	0.97
14	24	3.1e-06	0.00028	21.4	5.5	1	23	472	494	472	494	0.98
15	24	9.4e-06	0.00083	19.9	1.7	1	23	500	522	500	522	0.98
16	24	3.3e-06	0.00029	21.4	0.8	1	23	529	551	529	551	0.96
17	24	6.2e-07	5.5e-05	23.6	1.1	3	23	559	579	558	579	0.99
18	24	1.5e-05	0.0013	19.3	0.5	1	23	585	607	585	607	0.95
19	24	2.5e-07	2.2e-05	24.9	1.1	1	23	617	639	617	639	0.97
20	24	0.00061	0.054	14.2	1.9	1	23	645	668	645	668	0.97
21	24	0.0013	0.11	13.3	1.9	1	23	674	696	674	696	0.97
22	24	2.2e-06	0.0002	21.9	2.9	1	23	702	724	702	724	0.97
23	24	1.7e-05	0.0015	19.2	0.5	1	23	730	752	730	752	0.96
24	24	9.3e-06	0.00082	19.9	4.2	2	23	759	780	758	780	0.96

Sequence Information

Coding Sequence: ATGAGTGCatctgatttaaaatatgaacaaataaatgaaacagatGACGAAACAGATCTTAACCCTTTTAtacctgaaataaaattaattgaagatGATAtagaatgtaaaaattttgaaaatgtagATATTAAACAAGAGCATGAAGATGATGCCCAAGAAAATGAATGCCCCTCAGATATTATGTCATACTTAGCAGTTACTTTAGaagataatgtaaataaaataaaaaccgaaGTACAAGACTTAGAGTTATCGGAAAGTGTGATAGAATCAGAAGAATTTAAAACTCGTATGGTGAATGAACCAGATTTCCGACCATTTCAATGTTCATTCTGTAAACGAAGGTTTAGATTTCGAAGTAGTTTGATACATCACACGAAAAGACACGAAGGAAAAAAATACCACCcttgtaaaatatgtaacaaatcATTTTCTAGAATATGTAATCTTATAAGACATATGAGCATCCATATAGATGATAATCAAACATGCTGTCCATTATGCAGTCAAGTTTATACAACGTCCcgtagtttaaaaatacatctttTACATCAcaggaaacaaaaatattcctgTAAATTATGTGGGAAAGGGTTTATTCGCCGAACGCAGTTAGAGCGCCATGAATTCACTCATACCggagaaaaaaaattccattgcAATGAATGCAAGAAAAGTTTCGCatgtaaagaatatttattcgaacatttaaaaactcatacaaataataaaccatataATTGCCCAACatgtaacaaaaaattctCAAATGCATCAGTTTTATCCGAACACCTCCGAAGACATAATGGCGAGCGACCATTTGCTTGTACAATCTGCGAAAAATCGTTTCATACTAAATCagatttaaacaaacatacaAGAATACATATAGACGAGCGAAATGTACCATGTACACAGTGCCATAGACTATTCTACAGCGAATCTCAACTAAGCGTTCATATGAAAACACATTCcgatgataaaaatttcatttgtaaaacttgtgataaaaaatttgattacaaATCGCAGTTAAACCGTCATGAACGTATGCACACCGGTGAAAAACCATTCAGTTGCAATATTTGCGCCAAAAGTTTTGCTAGTTCCTCGCATTTATACCGCCATCTACGAAGCCATGTCCCAGACGAAAATTTAACTtgtaatatttgcaataaaacgtTTAAACGCGCAGcgtttttagaaaaacatttaGAAACGCATAAAAAACGTGTTTTCACATGTAAGATTTGTAATAACGAGTTtgaaaatcaaattgatttgAATCGACACAAAGCGACACATAACgatgaaataaaagttcatAAATGCACCGAATGCAATCGAAGCTTTCGAATTCTTGCGCATCTCCGCGACCATCATCAACGGATACATACCGATGATAGACCATTTCCTTGTAAATTATGCGATAAAAAATTCTGTCGAAACATCGACTTAGAACACCACATGCGACGACACAACAACATACGTCCATTTTCATGCGATATTTGTGAAAAATCGTTTGTTGCATGTTCGGACTTGCAACGACATTATAAAATCCATTTTCAACTAATTAGACCGTTCGATTGTAAAATATGTAGCAAGAGTTTTAAAACGCAAGCGGAGTTAAAAATGCATGGACGATGGCATAGCGATGTAAAACCGCATGGTTGTAACTTCTGCGATCAAAAATTCGTTACATCTTCGCAATTAAATCGCCATATGCGGATACATACTAACGAAAAACCgtttatttgtgaaatttgCAACCGTGCATTCgcatataaaaaagatttaaaacgcCATGAATTACAACACAGCGAAACAACtccgaaaatattaaaattcgatTGTAGTTCGTGTGATAAAAAGTTTGCGACAAATGCACAACTAACAAGACATATTAGAACGCACACTAATGAGCGTCCATTTTCATGTGATTTCTGCGATTCGAAATTTAAAGGGCAGTTTGAATTATCTAgacatattaaaaagttacatTCGACTGAACGGCCTTTTGAGTGTTCAAATtgcgataaaaaatttatttgtaatagtgAGCTGCTGCGGCATGCAGTCACTCACGAAGGGATCAGATCTCATGTTTGCGTTGAGTgtgataaatcattttttaataaaaatgaattaacgCGACATATGAAAAATCATTcggatgttaaaccatttaattGTAATCAATGTAATAAGGCTTTTGGTAGAGCTGATTTGTTAAATCGACATGAAGAACggcatattaaaaatactaaactaCACTGTCAGTTTTGCGATAAAGTTTTTactaatacttataattataatcggCATATGAGTACACATAAAAATTtggatcaaattaaaattgaaaataatacattttgcgaaattgataattaa
Protein Sequence: MSASDLKYEQINETDDETDLNPFIPEIKLIEDDIECKNFENVDIKQEHEDDAQENECPSDIMSYLAVTLEDNVNKIKTEVQDLELSESVIESEEFKTRMVNEPDFRPFQCSFCKRRFRFRSSLIHHTKRHEGKKYHPCKICNKSFSRICNLIRHMSIHIDDNQTCCPLCSQVYTTSRSLKIHLLHHRKQKYSCKLCGKGFIRRTQLERHEFTHTGEKKFHCNECKKSFACKEYLFEHLKTHTNNKPYNCPTCNKKFSNASVLSEHLRRHNGERPFACTICEKSFHTKSDLNKHTRIHIDERNVPCTQCHRLFYSESQLSVHMKTHSDDKNFICKTCDKKFDYKSQLNRHERMHTGEKPFSCNICAKSFASSSHLYRHLRSHVPDENLTCNICNKTFKRAAFLEKHLETHKKRVFTCKICNNEFENQIDLNRHKATHNDEIKVHKCTECNRSFRILAHLRDHHQRIHTDDRPFPCKLCDKKFCRNIDLEHHMRRHNNIRPFSCDICEKSFVACSDLQRHYKIHFQLIRPFDCKICSKSFKTQAELKMHGRWHSDVKPHGCNFCDQKFVTSSQLNRHMRIHTNEKPFICEICNRAFAYKKDLKRHELQHSETTPKILKFDCSSCDKKFATNAQLTRHIRTHTNERPFSCDFCDSKFKGQFELSRHIKKLHSTERPFECSNCDKKFICNSELLRHAVTHEGIRSHVCVECDKSFFNKNELTRHMKNHSDVKPFNCNQCNKAFGRADLLNRHEERHIKNTKLHCQFCDKVFTNTYNYNRHMSTHKNLDQIKIENNTFCEIDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -