Pcha002227.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- bab1
- Assembly
- GCA_002278615.1
- Location
- NEEE01001432.1:3094-8032[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-15 5.2e-12 45.5 0.1 3 45 390 432 388 432 0.92
Sequence Information
- Coding Sequence
- ATGAGCGGGGGTGCGCAGCAGTATTGTCTGCGATGGAATAACCACCGCTCAAATTTATTAACCGTCTTCGAcgagttattaaaaaatgaagcaTTCACGGATGTTACATTGGCCTGTGATGGCGGTACATCGGTTAAATGCCATAAAATGGTTTTAGCAGCATGTTCCTCTTACTTCCAAACATTATTCACCGAATTACCTTGTCGACATCCTGTTGTAGTTCTTAAGGATGTTACGTATACGGAAATTAAAGCAATTCTGGAATATATGTATAGAGGAGAAGTGAACGTTGCGCAAAACCAATTAGCAGCACTGTTAAAAGTAGCAGAAGCACTTAAAGTTAAAGGATTAGTTGAAGAAAAAGGAAATAATACCGAAAGTAATGGAAGAATTCCATCAGAAGTTGAAGAAAACAGAGAAAGAGAGCGATCACAAGAACTTGATGAAATGCATCAGCATTCTCCTCCCACAATAACTACATCCAGTACGAATATCCAATCAGCTGCACATAGTTCCAGTAGCGGTGGATCACCTCCCCATTCTACCGCCAATATAAATGGTCCAACTTCTTATGGAAGCAAATCTGGAATGAGCTCAGGAGGTTCTAGTTACTATGGAAACATGTATGGAAAACCTTCATCCATGTTAGACCGAAATAGTAGGCTTGGAGTACCAATGTGGGCTGTTCCTGGAGTTCCGTTAGCTCATCATCATACATCATCCGCAGTTTCTCCGCATGGAGGTAACCAAGCGACCCCCACCATGTTAGGAGGTTACTATAATCCTCTCAATTCCGATATGTCACCACtcaaaagaaagaaattatcTAGTTTATTGATGAATAGAGATACGCCGATACTAAGGACTGTTTTAGGACAAGGACAAGCCGATTCTTCTCAACCTGTTAGCTTGGTCTGTCGACCTGACAGTCATAATGATTTGAGCTTAAATGGATCCACTTATGACGAAAAGacTATGAAAAATGAACCCTCTGAAGACGCACAATCTCCGTATACTGATATTTCTATGATGGACGATGACGAGAAACCAAAATTAGGCACACCTTCCTCCTCACCACTTTCGTTCGGGGGAGGAATCACTTCTGGTATTGCCACGTATGTCCCTCAACAAAAACCCGAATGGAAACGTTATAAACAGTATACTCGAAACGATATCATGTCGGCAATTGAAGCAGTTCGAAACGGAATGAGCGCCTTACAAGCTGCTCGAAAATACGGTGTCCCATCGCGTACCCTTTATGATAAAGTCAAAAAATTGGGTATCACAACGAGTAGACCTTTCAAACGCGGTTCTAATGGAAGTAGCGCCTGTTTCCCTTACGGCATAAGCGGTACAAGTTCTCCCTACGGAGGTCATACAAGTGATGAATATGAAGTCAAACATGCTGCCCTTCTTGAAGCAAGTTTCCTTCAACATGCGCTAGATGGCAGAACAGGGGCAGTTGGAGGGGGTGATGTAGGAGACCGTGAGGCGTTAGTTGCAATGGCCGCTGCAGCGGCGGCACATCACGCGGCAGCTGCTGGAAATTCCACGAGTCCGGGCAATCACGGAATGGCACGAAGTCCAAGTCCAGGTCCCGGAATGGGATTAAGTATGTCGAAATACATGCATCCGAACAGTTTGACGCCATCACCGGCAGATGGCAGCGATCATCATCACAGCGAAACAAATGGTAGCTCCGAGCGGGATAGAGACGATGATGATGATCAAGTGGAAGATCTTTCAATGACGAGGCAATCTGATCAaattcaacaacaacaacaacagcaacagcaacaacaaTCTAGAGTTATAATGCCTCCAATGAATCAAGTATccactataataaaaaaggatgAATCCTTAAAAGAAGGTTTAAGAGATGAACCACCAGAAagaagagaaataaaaatagaacaaaatgtGTGA
- Protein Sequence
- MSGGAQQYCLRWNNHRSNLLTVFDELLKNEAFTDVTLACDGGTSVKCHKMVLAACSSYFQTLFTELPCRHPVVVLKDVTYTEIKAILEYMYRGEVNVAQNQLAALLKVAEALKVKGLVEEKGNNTESNGRIPSEVEENRERERSQELDEMHQHSPPTITTSSTNIQSAAHSSSSGGSPPHSTANINGPTSYGSKSGMSSGGSSYYGNMYGKPSSMLDRNSRLGVPMWAVPGVPLAHHHTSSAVSPHGGNQATPTMLGGYYNPLNSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCRPDSHNDLSLNGSTYDEKTMKNEPSEDAQSPYTDISMMDDDEKPKLGTPSSSPLSFGGGITSGIATYVPQQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSSACFPYGISGTSSPYGGHTSDEYEVKHAALLEASFLQHALDGRTGAVGGGDVGDREALVAMAAAAAAHHAAAAGNSTSPGNHGMARSPSPGPGMGLSMSKYMHPNSLTPSPADGSDHHHSETNGSSERDRDDDDDQVEDLSMTRQSDQIQQQQQQQQQQQSRVIMPPMNQVSTIIKKDESLKEGLRDEPPERREIKIEQNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229839;
- 90% Identity
- iTF_01229839;
- 80% Identity
- iTF_01229839;