Pcha018559.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- bab1
- Assembly
- GCA_002278615.1
- Location
- NEEE01002072.1:14836-19967[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-17 1.8e-14 53.4 0.0 1 43 28 71 28 73 0.95 2 2 1.5 2.7e+03 -1.6 1.1 6 15 155 164 153 169 0.87
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAATACGAATCAATCACTGGTGCATAATCTGAGGTTTCGAGAGCGAGGCCCCCTTAAGTCCTGGCGGCCCGAGACAATGGCCGAAGCCATCTTCTCGGTGCTCAAGGAGGGTCTCTCACTAAGCCAGGCCGCTCGCAAATACGATATCCCATACCCGACGTTTGTCTTGTACGCAAACCGAGTACATAACATGTTGGGGCCTTCTGCCGACGGTGGAGCCGACTTAAGGCCCAAAGGACGAGGCAGGCCTCAGAGAATACTGTTGGGAGTTTGGCCTGATGAACATATCAGGGGTGTTATTAGGGCCGTCGTATTTCGGGATACTCATCACATTAAAGAAGAGCCTCAACATTTGGGGGCATATCCCCGGATACATgAGGGTTACGTAAATACAACCCCAGGCAGTAATGGCCCCGAACCGACCGTCTCCCCAGGGGCAGCAGCTGCCGCAGCAGTAGCTGCAGTTGCTCAGGGATTACGTCAACAAATGTGCAGCATGGTAGCTGCAGCACAACATCAGAGTTCCTCTCACGACACGAATCCAGTGGCATCACTCGTAAATAGCTTAGCATTCGGTCACATGCCCAGTAACGGGGCAATGAGTCACGCAGGACTACGAGGCCTGCCATCAAGTCCTGCGGAGGACCTTCGAATGACCAGTCCTGCTGAATCCGCGTTAGACAGCCCATTAAGCAGTCCTCTAGGACTCACAATGGGCAGCGGACTTGAACCCGCTTTAAACTTAGGCCGCGATTTAAACCGTGAACTCAGTCGAGAATTAAACCGCGATTTAACCCGAGAACTAAATCGAGACCTAAGTCGAGACCTAAATCGAGACCTAAATCGAGACCTAAACCGAGACTTAAATAGAGAATTAAACCGGGATTTAAATCGTGAATTATCCCGGGACCTTTCAAGGGATTTAACAAGAGACCTAACGCGAGATTTATCCCGAGACTTAGGTCGAGATTTATCCCGAGATTTATCTCGAGATTTGGGACGAGACTTATCCCGAGAATTAAGCAGGGATTTAGGATTGCCACCGAATGTTGAAGTAGGTATTGGTGTTTCTGGAATGACCTATAAACCACCTAGACCATACAGTTCACCTAGACcagaaaatttattccaaGAAGATATTGATGAAATTGTAAAACCGTTACAATTAACAAGTCCGTTAAGAAGTCCGCCAAGATTAGGGTTAAAGGAGCATCCAGGTGGGAAGGACCCAAGTGCAGGAGTTCCAATAAAAGTAGAACCCATGACGGAATGTCGAGGCGAGTAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHHIKEEPQHLGAYPRIHEGYVNTTPGSNGPEPTVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSSHDTNPVASLVNSLAFGHMPSNGAMSHAGLRGLPSSPAEDLRMTSPAESALDSPLSSPLGLTMGSGLEPALNLGRDLNRELSRELNRDLTRELNRDLSRDLNRDLNRDLNRDLNRELNRDLNRELSRDLSRDLTRDLTRDLSRDLGRDLSRDLSRDLGRDLSRELSRDLGLPPNVEVGIGVSGMTYKPPRPYSSPRPENLFQEDIDEIVKPLQLTSPLRSPPRLGLKEHPGGKDPSAGVPIKVEPMTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -