Pcha003921.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- Mblk-1
- Assembly
- GCA_002278615.1
- Location
- NEEE01002928.1:15060-17513[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-18 5e-15 55.2 0.1 1 45 11 56 11 56 0.96 2 2 8.5e-19 1.5e-15 56.8 0.0 1 43 406 449 406 451 0.95
Sequence Information
- Coding Sequence
- ATGTCCGCGGTGGGCGGCCGACGCACGTATACCGAAGAGGAACTACAAGCAGCTCTACGGGATATCCAAAGTGGCAAGTTGGGCACAAGACGCGCAGCTGTTATCTATGGCATTCCACGGTCCACCCTTCGCAACAAAGTATATAAGTTGGCGATGGAAAGAGAGCGAGAAACACATTTAGTGCCTACAGGTCCACTTGGTACTCTTACACCTTTGGTAACCGACGAAGATGCTATAGATGATGACAAGGAATTATCAGGTGCTGAAGAGGAAAAAGAAGTGGAGAAAGCTCTTCAAGGACCATTATTATCAATGGCCGATATTGTACGTTTCTCAAATCTGTCCGAATCACCGGAAGCTATAAAAAGTTTTCTCATGCAACAATATCAGTTGAAAAATAGAGAAGGAGCTACTTCCGTACAAGATATGTGGGGAGGAATGGAACATAGTGCTGTAGGTCCATACATACAATTGATGATGGCTGGCCAATTAGCCAGTGGTAGCGCCAAAGAATCAGATTACATGCCTATGCTACCAGAATTAATGCGTAAAATAATAGCCGAAgaacaacatttaaataacgGTGAAAATAACGATAACACAAAACCATTATCGCAACCTAGCCCATCGAACTCTATCAAAACTGAACGACTTAAGACGGACTCCATGTCTGACATGGACACCGACGATTCTCCGTCAAATGTGATACTGAAAATTCCGTCCTTTAAACCGACTACAAGCAAAAATGGAGGAGATACGTACCGAAGTGAAACGGGCGCCATTGTATCGCCGCCTGTTACTAGCGAATCTGGTTCACCACCTATTGTAACTGGTAACATGTTATCATTACGAGAAGCAATCGCCAAAAGTATCAGTCAGAAATTTCAACAAAGTCCTGAACCACTTAAAATGCACTCTAGTGCCGTTGATATTGATTACAAACGAGTGGGTATAACACCTCCACTTACTGTTGGAATTCCACCAAATGCAATCATTAAAAACCATCAAACACCGTCCGAACCACCAACGCCACCAGCATCAGCACCGGCTGTACAGCCACCCACAATTGTTCACACACGTAATTTTCAATCAAGTGGTGCAGGGTCTACAAATAATTCTGCTGCAAAACAAGccacaaataataattcaggCGGTAGTGGTAGTTCACAAGGTGGCAAAGGCACACGACCAAAACGTGGAAAATATAGAAACTACGACCGTGATAGTTTGGTAGAAGCAGTCCGTGCTGTACAAAGAGGAGAAATGTCTGTACATCGAGCAGGTAGTTATTATGGTGTACCTCATTCAACTCTTGAATACAAAGTTAAAGAAAGGCATTTAATGCGACCAAGAAAACGTGATCCAAAACCAAATCCAGTTGATGAAAAAATTGCATCAATCAAAAGCCAAGAGATACGAAACATTCCAGATAAAATGAAACCTGTTATTAAACCACCGCAAAAATACCCGCCTACATCGCCCAATGGCATGAAAATGCCACCAATGTTTGATCCATCATCAATGGCGCCAATGGCATATACTCCGCCACCATTTCCATTTTGGCCTCATCCACCATTTCCCCATTTGCCATTAGATTTCCCTCATAATCCATCTACGTCTCAATTTCCACCCAATTTCGCCTCTCAAATGATGCAAAGATTACAAGAGCAGTCGGTACGCTGCCATCCAGATGCAGCCAGTAATACAGCTGGGCTATCAGGCGCTAATGGTAATAGTAACGCAATTCCAGCGGCAGCTGGAGTGACTAACCCTGCAACTTTAGCAAAAAGTGCCCGTGAGATGGCGGAATCATTGTACGATGGAACGGGAGCTAATGGTTCTTTCTTAGATGGTATCATTCGTTCGAGCCTTGAATCGGGCGTTCCAAACCCAGctgacaaaacaaataataaagaagaTACCAAAAATGTTGCCCCAGAAAACATGTCAAATAAAGCATTACTCGATCAACTGTGCAGAAACAGTCGTATAACACCGTTACCAAAAGCAAGTAGTGCTAACACTGAACCAAATAGTTCGGGTGATGAAAGCTACCGAAAAACAGGAAGTCCTTTGAATTTTGTCACGAagaatacaaataaagaaCAAGATAATGGCAAGTGCCGCGATGAAATCCAGACTATTGAACTTTCCAATGATTCAAATGAATCAACGAGCATCAAAGATGATGGACCATCACCATCTCCACCGCAACAATCCAATACAAATACATCAAGTAGTACGCAGCAATCTCCACCATCGCGCATTTATGTTAAACCACAGTTTCAAGAACTAACAAAACCCGAAAACTTAAAACCGGAAGTGCTAGTACGCTTCCGAACTACAGCTGACGAGTGCGATGATTCGGAATCAATTTTGTCGGAGCGGAACGGCATTTTAGCCGAGACCGTATCAGGAAGTGCCTCTGAAAAACCAGACGTGGCCCAAGACTGA
- Protein Sequence
- MSAVGGRRTYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAMERERETHLVPTGPLGTLTPLVTDEDAIDDDKELSGAEEEKEVEKALQGPLLSMADIVRFSNLSESPEAIKSFLMQQYQLKNREGATSVQDMWGGMEHSAVGPYIQLMMAGQLASGSAKESDYMPMLPELMRKIIAEEQHLNNGENNDNTKPLSQPSPSNSIKTERLKTDSMSDMDTDDSPSNVILKIPSFKPTTSKNGGDTYRSETGAIVSPPVTSESGSPPIVTGNMLSLREAIAKSISQKFQQSPEPLKMHSSAVDIDYKRVGITPPLTVGIPPNAIIKNHQTPSEPPTPPASAPAVQPPTIVHTRNFQSSGAGSTNNSAAKQATNNNSGGSGSSQGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKRDPKPNPVDEKIASIKSQEIRNIPDKMKPVIKPPQKYPPTSPNGMKMPPMFDPSSMAPMAYTPPPFPFWPHPPFPHLPLDFPHNPSTSQFPPNFASQMMQRLQEQSVRCHPDAASNTAGLSGANGNSNAIPAAAGVTNPATLAKSAREMAESLYDGTGANGSFLDGIIRSSLESGVPNPADKTNNKEDTKNVAPENMSNKALLDQLCRNSRITPLPKASSANTEPNSSGDESYRKTGSPLNFVTKNTNKEQDNGKCRDEIQTIELSNDSNESTSIKDDGPSPSPPQQSNTNTSSSTQQSPPSRIYVKPQFQELTKPENLKPEVLVRFRTTADECDDSESILSERNGILAETVSGSASEKPDVAQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -