Pcha008863.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonus chalceus
Gene Symbol
JARID2
Assembly
GCA_002278615.1
Location
CM008230.1:10131085-10136728[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-22 5.9e-19 68.5 0.0 6 89 1262 1343 1258 1343 0.93

Sequence Information

Coding Sequence
atggttGTAAATCGAAACGATACTAAACGAAAGAGAAAAGATAGTGATACAACGTTAGATACTCTGCCAGAGAGCCCCAAGAGgaCTAAAGTGCATGCACAACGTAAATTTGCACAGGGTTCAAATGTAAATAGTCCAGCTATTACACCTATTAAAGAAATCGAAAgagaaaaagtaaaatgtaaTGATGTTTTACCACCTGCAACTGAATTGTTACCAATTAAACGACCAAATACTGATGATTTTCTAACCTTCTTATGTTTTCGTGgaacaaatttattaccttcaaatttaaatttttttaatgcagCAAATAGTTACCCAAATCAAACTGAAACAACATCGAATAATGAAACCGCAACAAAATGTACTACATCAACAGCAAGCGTTACATCTGAAAGTGCAACAGCTTCGCAAAATCCTGAAAGACCATTTATTGCATTTGGTGTTAGAAAAAGAGCGGatccatttattaataataaattggaaaAGAAAAGACGTCATACTTTAGCATTGCAAACTTTACGTAGAAAATATCAAGAACAACGAATGGCTAAAATTCGCGCtgtaacaattgaaaaacaatctgaaggtattaagaaaaaaactaaaaatataacagttaGAACTACGCGTTCCGTTTCGCGAAGAGAAGTTGCTACTAatcagaagaaaaaaatacaagttgTAACTAAACGTGTGATAATAACAAGATCTCCAGTTAAATCATCGAATGTAAAACGACCTcttctaaaacaaaaaatgtgtttGCGTAGTCGAGGTCGCTTTACTCCTCGTGAATTAGCATCTCCTATGAAAAAACGtccaataaaagttaataaaataatgaaattaacacCGGCGTCATCATCAAAACAAGAAAGTTCTTCAGAATTCTCATCAGATGATGACCAGCCTCttgtaaaaacaatcaaaaagcAAACtaaggtaattttaaaatcttcgcCAAAAGTTACGAAAAAATCAGCAacagtttcaaaaaaatccaGTATTATTCGATTAACAAGAAGTACTCAACCACTATCTGGACttcatgataaaaatatttctcgcAGACCGCCACGTAAAACAAAAGAAGCTGCAGCTTTATACATGGAACTTTTAGGGAGAAAATTAGTCAACGAAGCTGAAATAGACGATGACGATGCTTCAATTGATAGTTTCCCTGAATTACCAAATGTTCGCCGAACTGAGCAAAgagaaaatgaaatgaaagcaAAAGTAAAAACTCAAGTTCAAATCGAAAATAAGATGAGTACAAGAAAAtcatctttattaataaaagataaagccGCGGACTCTggtaaagatataattaacactgaaaaaggtaaaaatataaatgtaaaaaccgttaaaaaaaataccgtGAATAGCGataataaagaagaaaaaaatgaaaaagaaaatgaaattaaaaaaagtttacgATCAACTCGTTCAGAAAAATACACGAAAACGGATCAAGAatttgaaaaagttaaaactGATACTCAAAccgaaaaatctaaaaaagatAAGTGTGATAtacaattagataaaattaagaaagtaAAACCTGAAATTCAATTAGATAAAagtaagaaagaaaaaatagatatacaGTTAGATAAACCTGCAAAAGATAAGACTGATACACAagtagaaaaaagtaaaaaagaaaaatgtgatgcaaatttaaaaaataataaaaaagatagtaGTAATACTCAaaccgaaaaaaataaaatgaaacaagattgtacagtaataaataaaaataaaaagaatattataaataccgagaaaaataagaagaataaaacagaaattattaaaaagaaaataaacccTAATATGgctgaaaataaaactaatactcaaacaaacaaaattaaagataatcgtattatatcaaaaattgaacaagataatgaacaattatttaatgattcaGATGAAGAACCTCTGGCAAATTTAacttcacaaaaaaaaactactaagcaaaataaaaaaactgctaCTACAGTGGATGTTAAGTCAccaacaagtaataaaaagaaaaatgtagaaaatatttctgctacaaatattaaagataataatacacAGACTAAAattgattgtaaaataatatcaaagaaaTCTCTTTCCGATGATGATGATTTTTACGGTTTTGcgcagataaaaaataaaaaattaccacctgataataaatgtatttatccaGTAAGTGAAGTACCGCTTCTTCCAAATACAGATATATTAGGTAAAAATGTACGAAGTCGGTcaagaaaagaaaaagtaaacatGTCTAATgaacaaatagaaaaatggTTAAATGATAATGTACTTGCCACTGAATGTAACAAGAAAgatttatttgagaaaaaatatgaggatgaaattttaaaacttgatataaaagaagaatgtaaaactgataatatgttattaactaGTCCTAGAACTTTAGAAGAAACATTTAACacactttcaaaaataaagaaagaaaaaactgatttatCTAAATCTACTATTAAAACAGATCAGTGTATTAAAGCACAATTAATATCACCTCCAAAAGTGGATAAAAATGTTAGTACAGGTGAAAGTAAATACTCTTTTCAACAAAGACGATCAATTCTTTGCAAAGACAGGAAAGATATATCTCCAAATACAAAGGCTTTTTCTCCAGAAAATGAAAGCAGTGTTTATGCTTTTGAAGAACCTGATTTGCCTGTAAATACACCATTTAGAAGCAATGTCCGTCGTCCGTCAAGTACTGCAACGTCTCGTTCTGAAGAAGATCCTTCAAGAATTATAGAAGATGATGACAAGAAGAAACAAAATGACGCAAAATTTCGATTACCAGCAGTTGTTAAATCAGCTGCAATTAAAAGTCAAGGGAAGCAAGAAGTATCTTTGACATTATCTGCTGATGAAGCAAATAACAGTGCTTCTATAGCAGTACAAGTAAATTTAGATTCAGACACAactttttctgaaaataatgTGAGTATGGAATGTTCTACTCAAACAGATGTAGGTGATGAAGATGGTGGTGGTCATCTATTTTATATCCCTCTTCAGCCAGGCAAACAGACTGCTACCAACCAGCAAATAATCCAAGGAGTTGCCGTAAAATTGGGTACCGAGAGTTCAGGAGGGTCTAATCAACGTCTTGTAATGCATGCTAAGTTAGTTACGCAGCCTCCACCTATGCCTGATAAACTTCCGCTTCTAAGTTCAAATCAGAAGCCATTAACGCAAACATCTTTAATGTATCCACCGGTAGGAACAGTTCAGCCTACATATCGACCAAAGCCAGCACAAGAAACTCCAAAATCATTATCATCGAAATCTACAAcagttgatattaaattaacaggCGACAGTTCAATTAATACTGAATCTAAAATTGTGCCAAGTTCTCCGAGtgcttcttcttcttctaGTGCCAAAATATACAAACGCGCTGTAAAACCAAGAGCACGTTCGTTAGATTTATGTGTACCTATTAATTCTACCGAATTCCCGAAAGCTAATAGTCCAGCTCAATTAGTAGAAGCGCCTACTTTCCATCCATCAGAAAAAGAATTTCAGGATCCCTTAGAATATATTGAGAAAATAAAGCCAATTGCAGAAAATTTTGGTATTTGTCGAATTATACCACCAGCAAATTTCAAACCGGAATGTAAAGTTAGCGACGATATGAGATTTACAGCTTATAATCAATATGTGCATAAAATGTTACATCGTTGGGGTCCAAATTTTAAAGAACTTAtggctattaaaaaatatttagcaacacaaagtattaatttaactcATCCTCCATGgatAGGTGGTATGGAAATAGATTTACCAAGATTATATCAAACTGTTCAATCTTTAGGAGGCCTCAAAGAAGTTATCGAAAAGAAACGTTGGCCTAAAGTTGCTGAGGGTATGAAAATACCTAAATCAGCTCAAGACCGTGTAACAAAATTAGATGatatatattgcaaatatttattaccctATGATACACTTTCTCCCGCTGAGCGCCAAAAATTGTTTGACGAAGTAGAAGCGGAGTGGGCTAAACGAGAACAGCGGACGTTTGAACGAACTCAACAACAAGCAACTTCAAGtacaaattcaaatgaatCAGATTCTGAATCTGGTGATGATGAAGCTGAAGAATGTACTGTCAAGGGCAGAAATATGGCTTTAAATGCGTTTTACCGAATTGCAAGGAATACTATGAGTATGTGGTTTAAATCAACAGAACCAAGTGCTCAAGAAGTAGAACAAGAATTTTGGAAACATGTTACTACTAGACAAAACCATATTTGTGTGCATTCTGGTTCAATTGATTCTAGTGGATGGGGTTATGGATTTGCTTGTAGTAAAAACAGTCCTTTCGCACGACATCCATGGAATCTCAAAATATTAACGAATAATAGTGGTTCTGTTTTAAGATCTATGGGACCAGTAAtgggtGTAACAGTACCAACTTTACATGTAGGTATGGTATTTAGTTCTTGTTGTTGGTATCGAGATCCACATGGTCTACCGTGGATAGAATATTTACATACTGGtggtaataaaatatggtATGGCATTCCGGATTCTTTCAGTAGTATATTCCGATCGGCACTTACAAAACTCGTACCCAGTTACTGCAGAGATAAAACACTTTGGTTAACATCTGATACTGCAATGATTCCGCCAACTTTATTAGTGAAAAACGGTGTTAGTTTATGCAGAACCGTTCAAGAACCCGGCCAGTTTATAGTTGTATTTCCAAAAGCATTTACATCAAGTATATGCAGTGGATATGTTGTTTCTGAAAGTGTTTATTTTGCTCCAGCTAATTGGTTGTTAACAGCACAACaagtttttaaagatattcgAGATAGTTGTGAACCATCGATGTTTTCTTTAGAAAGATTATTATTGAGTGTTGCTTCAGATAGTCGAACAAATTCAGATgttttacgtaaaataatgCCTGCTATTGAAGATTTACGTGATCGAGAAAATTTGGGCAGAACTAAGTTAGATAGTTTAGGACTTAAAGTAACTGAAAGATTACCATTACCTGATAATTCTAATCCGAGAAAAAAACGAAAGATGCAAGAGAATGATGGTGAATATGAGTGTGAAATTTGTAGAGCTAATCTTTATATTTCTCTagtcATTGATTCTCAAGAGGAAGGCGTTTACTGTTTAGATCATGCAGTGGAccatattaaaagtaaattagaaCAGCTAAAACattgcaaattattattcacCTATGATATACAAGATTTAGATAATCttatagaaaaaatgaaattaaatatggaaACAAAAACGCCCGTAAAGAAATCtatgaaatatgtttctaaagcaactttacttaaataa
Protein Sequence
MVVNRNDTKRKRKDSDTTLDTLPESPKRTKVHAQRKFAQGSNVNSPAITPIKEIEREKVKCNDVLPPATELLPIKRPNTDDFLTFLCFRGTNLLPSNLNFFNAANSYPNQTETTSNNETATKCTTSTASVTSESATASQNPERPFIAFGVRKRADPFINNKLEKKRRHTLALQTLRRKYQEQRMAKIRAVTIEKQSEGIKKKTKNITVRTTRSVSRREVATNQKKKIQVVTKRVIITRSPVKSSNVKRPLLKQKMCLRSRGRFTPRELASPMKKRPIKVNKIMKLTPASSSKQESSSEFSSDDDQPLVKTIKKQTKVILKSSPKVTKKSATVSKKSSIIRLTRSTQPLSGLHDKNISRRPPRKTKEAAALYMELLGRKLVNEAEIDDDDASIDSFPELPNVRRTEQRENEMKAKVKTQVQIENKMSTRKSSLLIKDKAADSGKDIINTEKGKNINVKTVKKNTVNSDNKEEKNEKENEIKKSLRSTRSEKYTKTDQEFEKVKTDTQTEKSKKDKCDIQLDKIKKVKPEIQLDKSKKEKIDIQLDKPAKDKTDTQVEKSKKEKCDANLKNNKKDSSNTQTEKNKMKQDCTVINKNKKNIINTEKNKKNKTEIIKKKINPNMAENKTNTQTNKIKDNRIISKIEQDNEQLFNDSDEEPLANLTSQKKTTKQNKKTATTVDVKSPTSNKKKNVENISATNIKDNNTQTKIDCKIISKKSLSDDDDFYGFAQIKNKKLPPDNKCIYPVSEVPLLPNTDILGKNVRSRSRKEKVNMSNEQIEKWLNDNVLATECNKKDLFEKKYEDEILKLDIKEECKTDNMLLTSPRTLEETFNTLSKIKKEKTDLSKSTIKTDQCIKAQLISPPKVDKNVSTGESKYSFQQRRSILCKDRKDISPNTKAFSPENESSVYAFEEPDLPVNTPFRSNVRRPSSTATSRSEEDPSRIIEDDDKKKQNDAKFRLPAVVKSAAIKSQGKQEVSLTLSADEANNSASIAVQVNLDSDTTFSENNVSMECSTQTDVGDEDGGGHLFYIPLQPGKQTATNQQIIQGVAVKLGTESSGGSNQRLVMHAKLVTQPPPMPDKLPLLSSNQKPLTQTSLMYPPVGTVQPTYRPKPAQETPKSLSSKSTTVDIKLTGDSSINTESKIVPSSPSASSSSSAKIYKRAVKPRARSLDLCVPINSTEFPKANSPAQLVEAPTFHPSEKEFQDPLEYIEKIKPIAENFGICRIIPPANFKPECKVSDDMRFTAYNQYVHKMLHRWGPNFKELMAIKKYLATQSINLTHPPWIGGMEIDLPRLYQTVQSLGGLKEVIEKKRWPKVAEGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEAEWAKREQRTFERTQQQATSSTNSNESDSESGDDEAEECTVKGRNMALNAFYRIARNTMSMWFKSTEPSAQEVEQEFWKHVTTRQNHICVHSGSIDSSGWGYGFACSKNSPFARHPWNLKILTNNSGSVLRSMGPVMGVTVPTLHVGMVFSSCCWYRDPHGLPWIEYLHTGGNKIWYGIPDSFSSIFRSALTKLVPSYCRDKTLWLTSDTAMIPPTLLVKNGVSLCRTVQEPGQFIVVFPKAFTSSICSGYVVSESVYFAPANWLLTAQQVFKDIRDSCEPSMFSLERLLLSVASDSRTNSDVLRKIMPAIEDLRDRENLGRTKLDSLGLKVTERLPLPDNSNPRKKRKMQENDGEYECEICRANLYISLVIDSQEEGVYCLDHAVDHIKSKLEQLKHCKLLFTYDIQDLDNLIEKMKLNMETKTPVKKSMKYVSKATLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-